Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
VRK1Q99986 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK1Q99986 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.31■□□□□ 0.36
VRK1Q99986 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK1Q99986 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
VRK1Q99986 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK1Q99986 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.31■□□□□ 0.36
VRK1Q99986 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VRK1Q99986 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK1Q99986 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.31■□□□□ 0.36
VRK1Q99986 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
VRK1Q99986 RPS2P52-201ENST00000469610 820 ntBASIC17.31■□□□□ 0.36
VRK1Q99986 AP006294.2-201ENST00000641667 209 ntBASIC17.31■□□□□ 0.36
VRK1Q99986 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
VRK1Q99986 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.31■□□□□ 0.36
VRK1Q99986 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK1Q99986 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VRK1Q99986 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK1Q99986 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
VRK1Q99986 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
VRK1Q99986 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
VRK1Q99986 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK1Q99986 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK1Q99986 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
VRK1Q99986 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK1Q99986 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
VRK1Q99986 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
VRK1Q99986 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
VRK1Q99986 STAC-204ENST00000457375 1366 ntTSL 2 BASIC17.3■□□□□ 0.36
VRK1Q99986 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.3■□□□□ 0.36
VRK1Q99986 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
VRK1Q99986 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.3■□□□□ 0.36
VRK1Q99986 AC098590.1-201ENST00000468126 897 ntBASIC17.3■□□□□ 0.36
VRK1Q99986 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.3■□□□□ 0.36
VRK1Q99986 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.3■□□□□ 0.36
VRK1Q99986 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
VRK1Q99986 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VRK1Q99986 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.3■□□□□ 0.36
VRK1Q99986 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK1Q99986 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VRK1Q99986 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VRK1Q99986 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VRK1Q99986 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VRK1Q99986 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC17.29■□□□□ 0.36
VRK1Q99986 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VRK1Q99986 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
VRK1Q99986 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
VRK1Q99986 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VRK1Q99986 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.29■□□□□ 0.36
VRK1Q99986 AC008403.3-201ENST00000598924 454 ntBASIC17.29■□□□□ 0.36
VRK1Q99986 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
VRK1Q99986 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VRK1Q99986 AC112907.3-201ENST00000577781 2400 ntBASIC17.29■□□□□ 0.36
VRK1Q99986 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VRK1Q99986 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
VRK1Q99986 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VRK1Q99986 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VRK1Q99986 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VRK1Q99986 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
VRK1Q99986 AL158211.5-201ENST00000623583 2518 ntBASIC17.28■□□□□ 0.36
VRK1Q99986 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VRK1Q99986 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK1Q99986 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK1Q99986 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK1Q99986 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VRK1Q99986 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK1Q99986 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK1Q99986 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VRK1Q99986 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VRK1Q99986 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK1Q99986 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VRK1Q99986 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.28■□□□□ 0.36
VRK1Q99986 GCSHP5-201ENST00000443090 522 ntBASIC17.28■□□□□ 0.36
VRK1Q99986 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.28■□□□□ 0.36
VRK1Q99986 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.28■□□□□ 0.36
VRK1Q99986 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.28■□□□□ 0.36
VRK1Q99986 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.28■□□□□ 0.36
VRK1Q99986 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.28■□□□□ 0.36
VRK1Q99986 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.28■□□□□ 0.36
VRK1Q99986 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK1Q99986 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK1Q99986 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms