Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC29.86■■■□□ 2.373e-10■■■■□ 22.2
UPF1Q92900 GNB2-212ENST00000470354 902 ntTSL 527.74■■■□□ 2.033e-12■■■■□ 22.2
UPF1Q92900 MEGF8-207ENST00000599787 660 ntTSL 327.34■■□□□ 1.973e-12■■■■□ 22.2
UPF1Q92900 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.971e-6■■■■□ 22.2
UPF1Q92900 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC25.87■■□□□ 1.731e-6■■■■□ 22.2
UPF1Q92900 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.651e-6■■■■□ 22.2
UPF1Q92900 PTK7-211ENST00000473339 870 ntTSL 323.22■■□□□ 1.311e-6■■■■□ 22.2
UPF1Q92900 POMT1-202ENST00000372220 1741 ntTSL 523.19■■□□□ 1.31e-6■■■■□ 22.2
UPF1Q92900 GTPBP6-202ENST00000485332 2016 ntTSL 222.58■■□□□ 1.21e-6■■■■□ 22.2
UPF1Q92900 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.171e-6■■■■□ 22.2
UPF1Q92900 SLC2A1-205ENST00000475162 598 ntTSL 521.22■□□□□ 0.991e-22■■■■□ 22.2
UPF1Q92900 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.941e-6■■■■□ 22.2
UPF1Q92900 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC20.8■□□□□ 0.921e-6■■■■□ 22.2
UPF1Q92900 C1orf43-207ENST00000470180 1861 ntTSL 519.6■□□□□ 0.736e-7■■■■□ 22.2
UPF1Q92900 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.43■□□□□ 0.76e-7■■■■□ 22.2
UPF1Q92900 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.59■□□□□ 0.576e-7■■■■□ 22.2
UPF1Q92900 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.491e-6■■■■□ 22.2
UPF1Q92900 TMEM141-206ENST00000489739 551 ntTSL 317.73■□□□□ 0.431e-6■■■■□ 22.2
UPF1Q92900 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.266e-7■■■■□ 22.2
UPF1Q92900 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.211e-6■■■■□ 22.2
UPF1Q92900 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.33■□□□□ 0.21e-6■■■■□ 22.2
UPF1Q92900 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.161e-6■■■■□ 22.2
UPF1Q92900 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC15.77■□□□□ 0.121e-6■■■■□ 22.2
UPF1Q92900 ACP1-202ENST00000272067 1552 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.053e-10■■■■□ 22.2
UPF1Q92900 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.071e-6■■■■□ 22.2
UPF1Q92900 AC083862.2-201ENST00000608819 1145 ntBASIC13.93□□□□□ -0.181e-6■■■■□ 22.2
UPF1Q92900 POMT1-203ENST00000372228 3123 ntTSL 1 (best) BASIC13.41□□□□□ -0.261e-6■■■■□ 22.2
UPF1Q92900 FAM234B-202ENST00000416494 2623 ntTSL 212.85□□□□□ -0.351e-6■■■■□ 22.2
UPF1Q92900 POMT1-215ENST00000485278 3420 ntTSL 212.79□□□□□ -0.361e-6■■■■□ 22.2
UPF1Q92900 DOT1L-201ENST00000398665 7436 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.42e-7■■■■□ 22.2
UPF1Q92900 FAM234B-201ENST00000197268 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.541e-6■■■■□ 22.2
UPF1Q92900 FAM234B-204ENST00000537625 2011 ntTSL 1 (best)9.39□□□□□ -0.911e-6■■■■□ 22.2
UPF1Q92900 C1orf43-208ENST00000483282 456 ntTSL 38.96□□□□□ -0.982e-10■■■■□ 22.2
UPF1Q92900 MICAL2-214ENST00000526604 435 ntTSL 215.17■□□□□ 0.027e-9■■■■□ 22.2
UPF1Q92900 PLOD3-206ENST00000454310 1098 ntAPPRIS ALT2 TSL 520.82■□□□□ 0.922e-11■■■■□ 22.2
UPF1Q92900 PLOD3-201ENST00000223127 2920 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.092e-11■■■■□ 22.2
UPF1Q92900 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.942e-7■■■■□ 22.2
UPF1Q92900 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.832e-7■■■■□ 22.2
UPF1Q92900 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.53□□□□□ -1.842e-7■■■■□ 22.2
UPF1Q92900 ATP8B2-202ENST00000368489 5861 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.541e-9■■■■□ 22.2
UPF1Q92900 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC8.62□□□□□ -1.036e-7■■■■□ 22.2
UPF1Q92900 ADAL-202ENST00000422466 3767 ntTSL 5 BASIC8.35□□□□□ -1.076e-7■■■■□ 22.2
UPF1Q92900 CA8-201ENST00000317995 3812 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.872e-6■■■■□ 22.2
UPF1Q92900 NCOA4-207ENST00000585132 3489 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.821e-18■■■■□ 22.2
UPF1Q92900 NCOA4-204ENST00000581486 3549 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.161e-18■■■■□ 22.2
UPF1Q92900 COG8-202ENST00000562595 2262 ntTSL 524.07■■□□□ 1.441e-6■■■■□ 22.2
UPF1Q92900 COG8-203ENST00000564419 936 ntTSL 520.28■□□□□ 0.841e-6■■■■□ 22.2
UPF1Q92900 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.071e-6■■■■□ 22.2
UPF1Q92900 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.71■□□□□ 0.432e-6■■■■□ 22.2
UPF1Q92900 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.176e-12■■■■□ 22.2
UPF1Q92900 SAR1A-205ENST00000373242 5981 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.616e-12■■■■□ 22.2
UPF1Q92900 SAR1A-202ENST00000373238 3227 ntAPPRIS P1 TSL 2 BASIC9.48□□□□□ -0.896e-12■■■■□ 22.2
UPF1Q92900 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.156e-12■■■■□ 22.2
UPF1Q92900 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.531e-9■■■■□ 22.2
UPF1Q92900 IGSF3-202ENST00000369483 7326 ntAPPRIS P4 TSL 5 BASIC12.02□□□□□ -0.494e-6■■■■□ 22.2
UPF1Q92900 IGSF3-203ENST00000369486 7254 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.54e-6■■■■□ 22.2
UPF1Q92900 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC29.15■■■□□ 2.268e-9■■■■□ 22.2
UPF1Q92900 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC27.89■■■□□ 2.068e-9■■■■□ 22.2
UPF1Q92900 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC25.03■■□□□ 1.68e-9■■■■□ 22.2
UPF1Q92900 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC22.68■■□□□ 1.228e-9■■■■□ 22.2
UPF1Q92900 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.338e-9■■■■□ 22.2
UPF1Q92900 SELENOF-205ENST00000469566 831 ntTSL 213.77□□□□□ -0.218e-9■■■■□ 22.2
UPF1Q92900 LINC00888-201ENST00000468380 1241 ntTSL 229.14■■■□□ 2.262e-7■■■■□ 22.2
UPF1Q92900 LINC00888-203ENST00000482098 794 ntTSL 211.83□□□□□ -0.522e-7■■■■□ 22.2
UPF1Q92900 LINC00888-204ENST00000487386 421 ntBASIC10.74□□□□□ -0.692e-7■■■■□ 22.2
UPF1Q92900 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.29■□□□□ 0.049e-7■■■■□ 22.2
UPF1Q92900 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.049e-7■■■■□ 22.2
UPF1Q92900 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.974e-7■■■■□ 22.2
UPF1Q92900 IRGQ-204ENST00000601520 495 ntTSL 318.33■□□□□ 0.524e-7■■■■□ 22.2
UPF1Q92900 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.064e-7■■■■□ 22.2
UPF1Q92900 STON2-209ENST00000614646 2964 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.173e-7■■■■□ 22.1
UPF1Q92900 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.13■□□□□ 0.972e-6■■■■□ 22.1
UPF1Q92900 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.322e-6■■■■□ 22.1
UPF1Q92900 CDCA5-205ENST00000524733 835 ntTSL 325.29■■□□□ 1.645e-13■■■■□ 22.1
UPF1Q92900 EYA3-203ENST00000373871 6085 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.016e-7■■■■□ 22.1
UPF1Q92900 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC8.21□□□□□ -1.16e-7■■■■□ 22.1
UPF1Q92900 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC7.42□□□□□ -1.226e-7■■■■□ 22.1
UPF1Q92900 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.197e-8■■■■□ 22.1
UPF1Q92900 KCTD20-204ENST00000449081 4094 ntTSL 1 (best) BASIC12.52□□□□□ -0.41e-7■■■■□ 22.1
UPF1Q92900 CYB561-216ENST00000582297 897 ntTSL 3 BASIC22.91■■□□□ 1.269e-7■■■■□ 22.1
UPF1Q92900 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.089e-7■■■■□ 22.1
UPF1Q92900 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.892e-6■■■■□ 22.1
UPF1Q92900 NRSN2-207ENST00000608875 941 ntTSL 319.13■□□□□ 0.652e-6■■■■□ 22.1
UPF1Q92900 NRSN2-206ENST00000608736 712 ntTSL 3 BASIC17.53■□□□□ 0.42e-6■■■■□ 22.1
UPF1Q92900 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.322e-6■■■■□ 22.1
UPF1Q92900 NRSN2-205ENST00000608467 504 ntTSL 5 BASIC16.09■□□□□ 0.172e-6■■■■□ 22.1
UPF1Q92900 IRAK1-209ENST00000444254 783 ntTSL 526.38■■□□□ 1.815e-10■■■■□ 22.1
UPF1Q92900 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.32e-7■■■■□ 22.1
UPF1Q92900 DPM2-205ENST00000495270 1662 ntTSL 1 (best)17.97■□□□□ 0.472e-7■■■■□ 22.1
UPF1Q92900 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.437e-7■■■■□ 22.1
UPF1Q92900 RAB6A-201ENST00000310653 3389 ntAPPRIS P5 TSL 1 (best) BASIC13.77□□□□□ -0.212e-10■■■■□ 22.1
UPF1Q92900 RAB6A-202ENST00000336083 3085 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.452e-10■■■■□ 22.1
UPF1Q92900 SMARCA2-227ENST00000634760 5847 ntTSL 520.89■□□□□ 0.943e-6■■■■□ 22.1
UPF1Q92900 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.53□□□□□ -0.083e-6■■■■□ 22.1
UPF1Q92900 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.47□□□□□ -0.093e-6■■■■□ 22.1
UPF1Q92900 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.183e-6■■■■□ 22.1
UPF1Q92900 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.243e-6■■■■□ 22.1
UPF1Q92900 SMARCA2-209ENST00000382203 5867 ntTSL 1 (best) BASIC12.21□□□□□ -0.463e-6■■■■□ 22.1
UPF1Q92900 SMARCA2-263ENST00000637806 7061 ntTSL 5 BASIC11.26□□□□□ -0.613e-6■■■■□ 22.1
UPF1Q92900 SMARCA2-258ENST00000637103 5657 ntTSL 5 BASIC10.88□□□□□ -0.673e-6■■■■□ 22.1
Retrieved 100 of 15,879 protein–RNA pairs in 149 ms