RNA–Protein interactions for RNA: ENST00000487386.1

LINC00888-204, long intergenic non-protein coding RNA 888, humanhuman

BASIC

Gene LINC00888, Length 421 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00888-204ENST00000487386 AEBP2Q6ZN18 517 aaPredicted RBP23.83■■□□□ 1.41
LINC00888-204ENST00000487386 CHIC1Q5VXU3 224 aa23.23■■□□□ 1.31
LINC00888-204ENST00000487386 PHF23Q9BUL5 403 aaPredicted RBP20.45■□□□□ 0.86
LINC00888-204ENST00000487386 SENP3Q9H4L4 574 aaPredicted RBP20.18■□□□□ 0.82
LINC00888-204ENST00000487386 PLPPR3Q6T4P5 718 aa18.82■□□□□ 0.6
LINC00888-204ENST00000487386 FOXD1Q16676 465 aa18.76■□□□□ 0.59
LINC00888-204ENST00000487386 PPP6R1Q9UPN7 881 aa18.04■□□□□ 0.48
LINC00888-204ENST00000487386 ADRA2BP18089 450 aa17.99■□□□□ 0.47
LINC00888-204ENST00000487386 POTEDQ86YR6 584 aa17.66■□□□□ 0.42
LINC00888-204ENST00000487386 PIAS4Q8N2W9 510 aaPredicted RBP17.63■□□□□ 0.41
LINC00888-204ENST00000487386 MSH5O43196 834 aa17.28■□□□□ 0.36
LINC00888-204ENST00000487386 PPP4R3CPQ6ZMV5 832 aa16.59■□□□□ 0.25
LINC00888-204ENST00000487386 SCAF1Q9H7N4 1312 aaKnown RBP16.44■□□□□ 0.22
LINC00888-204ENST00000487386 MAPK8IP2Q13387 824 aaPredicted RBP16.34■□□□□ 0.21
LINC00888-204ENST00000487386 KCNA4P22459 653 aa16.17■□□□□ 0.18
LINC00888-204ENST00000487386 CNKSR2Q8WXI2 1034 aa16.13■□□□□ 0.17
LINC00888-204ENST00000487386 DMRT2Q9Y5R5 561 aa16.13■□□□□ 0.17
LINC00888-204ENST00000487386 NCBP3Q53F19 620 aaKnown RBP16.11■□□□□ 0.17
LINC00888-204ENST00000487386 NPM3O75607 178 aaKnown RBP15.91■□□□□ 0.14
LINC00888-204ENST00000487386 RNF216Q9NWF9 866 aaPredicted RBP15.84■□□□□ 0.13
LINC00888-204ENST00000487386 HOXD11P31277 338 aaPredicted RBP15.81■□□□□ 0.12
LINC00888-204ENST00000487386 DNAJC5BQ9UF47 199 aa15.55■□□□□ 0.08
LINC00888-204ENST00000487386 SLC4A1APQ9BWU0 796 aaKnown RBP15.36■□□□□ 0.05
LINC00888-204ENST00000487386 DCAF8L1A6NGE4 600 aa15.32■□□□□ 0.04
LINC00888-204ENST00000487386 SLC4A2P04920 1241 aa15.06■□□□□ 0
LINC00888-204ENST00000487386 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.98□□□□□ -0.01
LINC00888-204ENST00000487386 ZBTB22O15209 634 aa14.9□□□□□ -0.02
LINC00888-204ENST00000487386 FOXD4L1Q9NU39 408 aa14.88□□□□□ -0.03
LINC00888-204ENST00000487386 EHMT2Q96KQ7 1210 aa14.84□□□□□ -0.03
LINC00888-204ENST00000487386 RNF39Q9H2S5 420 aa14.84□□□□□ -0.03
LINC00888-204ENST00000487386 U3KPZ7 1027 aaPredicted RBP14.79□□□□□ -0.04
LINC00888-204ENST00000487386 CSRNP3Q8WYN3 585 aa14.78□□□□□ -0.04
LINC00888-204ENST00000487386 MYCNP04198 464 aaPredicted RBP14.68□□□□□ -0.06
LINC00888-204ENST00000487386 C1QBPQ07021 282 aaKnown RBP14.64□□□□□ -0.07
LINC00888-204ENST00000487386 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.55□□□□□ -0.08
LINC00888-204ENST00000487386 HNRNPUL2Q1KMD3 747 aaKnown RBP14.55□□□□□ -0.08
LINC00888-204ENST00000487386 SAMD1Q6SPF0 538 aaPredicted RBP14.51□□□□□ -0.09
LINC00888-204ENST00000487386 CACNB1Q02641 598 aaPredicted RBP14.49□□□□□ -0.09
LINC00888-204ENST00000487386 ATXN8OSP0DMR3 200 aa14.39□□□□□ -0.11
LINC00888-204ENST00000487386 APLP2Q06481 763 aa14.39□□□□□ -0.11
LINC00888-204ENST00000487386 SPINK5Q9NQ38 1064 aaPredicted RBP14.36□□□□□ -0.11
LINC00888-204ENST00000487386 ATF5Q9Y2D1 282 aaPredicted RBP14.32□□□□□ -0.12
LINC00888-204ENST00000487386 CAPN15O75808 1086 aa14.26□□□□□ -0.13
LINC00888-204ENST00000487386 ZNF219Q9P2Y4 722 aaPredicted RBP14.21□□□□□ -0.13
LINC00888-204ENST00000487386 TRHP20396 242 aaPredicted RBP14.19□□□□□ -0.14
LINC00888-204ENST00000487386 DSG3P32926 999 aa14.1□□□□□ -0.15
LINC00888-204ENST00000487386 ABCB7O75027 752 aa14□□□□□ -0.17
LINC00888-204ENST00000487386 POLA2Q14181 598 aa13.99□□□□□ -0.17
LINC00888-204ENST00000487386 ZBTB12Q9Y330 459 aaPredicted RBP13.75□□□□□ -0.21
LINC00888-204ENST00000487386 MKRN4PQ13434 485 aaPredicted RBP13.71□□□□□ -0.21
LINC00888-204ENST00000487386 FBLN2P98095 1184 aa13.66□□□□□ -0.22
LINC00888-204ENST00000487386 POTEHQ6S545 545 aa13.59□□□□□ -0.23
LINC00888-204ENST00000487386 OSCARQ8IYS5 282 aa13.5□□□□□ -0.25
LINC00888-204ENST00000487386 SPDYE2BA6NHP3 402 aa13.39□□□□□ -0.27
LINC00888-204ENST00000487386 SPDYE6P0CI01 402 aa13.39□□□□□ -0.27
LINC00888-204ENST00000487386 SPDYE2Q495Y8 402 aa13.39□□□□□ -0.27
LINC00888-204ENST00000487386 RBM42Q9BTD8 480 aaKnown RBP13.39□□□□□ -0.27
LINC00888-204ENST00000487386 SPDYE4A6NLX3 237 aa13.34□□□□□ -0.27
LINC00888-204ENST00000487386 SSUH2Q9Y2M2 353 aa13.32□□□□□ -0.28
LINC00888-204ENST00000487386 ZNF692Q9BU19 519 aaPredicted RBP13.31□□□□□ -0.28
LINC00888-204ENST00000487386 FKBP8Q14318 412 aa13.3□□□□□ -0.28
LINC00888-204ENST00000487386 AKT1S1Q96B36 256 aa13.25□□□□□ -0.29
LINC00888-204ENST00000487386 PROM2Q8N271 834 aa13.19□□□□□ -0.3
LINC00888-204ENST00000487386 PABPN1Q86U42 306 aaKnown RBP eCLIP13.14□□□□□ -0.31
LINC00888-204ENST00000487386 REM2Q8IYK8 340 aaPredicted RBP13.12□□□□□ -0.31
LINC00888-204ENST00000487386 SPDYE1Q8NFV5 336 aaPredicted RBP12.98□□□□□ -0.33
LINC00888-204ENST00000487386 PITPNM1O00562 1244 aa12.97□□□□□ -0.33
LINC00888-204ENST00000487386 STAG3Q9UJ98 1225 aa12.92□□□□□ -0.34
LINC00888-204ENST00000487386 CLEC11AQ9Y240 323 aa12.89□□□□□ -0.35
LINC00888-204ENST00000487386 CHRDL2Q6WN34 429 aa12.86□□□□□ -0.35
LINC00888-204ENST00000487386 FBXO3Q9UK99 471 aa12.85□□□□□ -0.35
LINC00888-204ENST00000487386 PRR29P0C7W0 189 aa12.8□□□□□ -0.36
LINC00888-204ENST00000487386 FXR2P51116 673 aaKnown RBP eCLIP12.76□□□□□ -0.37
LINC00888-204ENST00000487386 PIP4P2Q8N4L2 257 aa12.71□□□□□ -0.37
LINC00888-204ENST00000487386 VASPP50552 380 aaPredicted RBP12.69□□□□□ -0.38
LINC00888-204ENST00000487386 CREBZFQ9NS37 354 aa12.68□□□□□ -0.38
LINC00888-204ENST00000487386 MIER1Q8N108 512 aa12.63□□□□□ -0.39
LINC00888-204ENST00000487386 PRKAR2AP13861 404 aaKnown RBP12.62□□□□□ -0.39
LINC00888-204ENST00000487386 CHADLQ6NUI6 762 aa12.61□□□□□ -0.39
LINC00888-204ENST00000487386 PLCD3Q8N3E9 789 aa12.59□□□□□ -0.39
LINC00888-204ENST00000487386 MNX1P50219 401 aaPredicted RBP12.57□□□□□ -0.4
LINC00888-204ENST00000487386 IFNLR1Q8IU57 520 aaPredicted RBP12.54□□□□□ -0.4
LINC00888-204ENST00000487386 PLEKHG5O94827 1062 aa12.53□□□□□ -0.4
LINC00888-204ENST00000487386 FARP1Q9Y4F1 1045 aaPredicted RBP12.52□□□□□ -0.41
LINC00888-204ENST00000487386 ZBTB47Q9UFB7 747 aaPredicted RBP12.47□□□□□ -0.41
LINC00888-204ENST00000487386 KLHL34Q8N239 644 aa12.43□□□□□ -0.42
LINC00888-204ENST00000487386 NPM1P06748 294 aaKnown RBP eCLIP12.42□□□□□ -0.42
LINC00888-204ENST00000487386 NUBP1P53384 320 aa12.38□□□□□ -0.43
LINC00888-204ENST00000487386 SPOCK2Q92563 424 aa12.37□□□□□ -0.43
LINC00888-204ENST00000487386 C19orf67A6NJJ6 358 aa12.33□□□□□ -0.44
LINC00888-204ENST00000487386 RASEFQ8IZ41 740 aa12.31□□□□□ -0.44
LINC00888-204ENST00000487386 HAX1O00165 279 aa12.26□□□□□ -0.45
LINC00888-204ENST00000487386 CD44P16070 742 aaKnown RBP12.25□□□□□ -0.45
LINC00888-204ENST00000487386 EVX2Q03828 476 aa12.23□□□□□ -0.45
LINC00888-204ENST00000487386 FAM212AQ96EL1 285 aa12.21□□□□□ -0.45
LINC00888-204ENST00000487386 TSPYL2Q9H2G4 693 aaPredicted RBP12.2□□□□□ -0.46
LINC00888-204ENST00000487386 GSE1Q14687 1217 aa12.19□□□□□ -0.46
LINC00888-204ENST00000487386 DCAF8Q5TAQ9 597 aa12.19□□□□□ -0.46
LINC00888-204ENST00000487386 PAK3O75914 559 aaPredicted RBP12.18□□□□□ -0.46
LINC00888-204ENST00000487386 SP7Q8TDD2 431 aaPredicted RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms