RNA–Protein interactions for RNA: ENST00000482098.1

LINC00888-203, long intergenic non-protein coding RNA 888, humanhuman

TSL 2

Gene LINC00888, Length 794 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00888-203ENST00000482098 CHIC1Q5VXU3 224 aa23.2■■□□□ 1.3
LINC00888-203ENST00000482098 AEBP2Q6ZN18 517 aaPredicted RBP22.57■■□□□ 1.2
LINC00888-203ENST00000482098 PHF23Q9BUL5 403 aaPredicted RBP20.46■□□□□ 0.87
LINC00888-203ENST00000482098 PLPPR3Q6T4P5 718 aa19.38■□□□□ 0.69
LINC00888-203ENST00000482098 SENP3Q9H4L4 574 aaPredicted RBP19.09■□□□□ 0.65
LINC00888-203ENST00000482098 EHMT2Q96KQ7 1210 aa18.19■□□□□ 0.5
LINC00888-203ENST00000482098 ADRA2BP18089 450 aa18.02■□□□□ 0.48
LINC00888-203ENST00000482098 KCNA4P22459 653 aa18.02■□□□□ 0.48
LINC00888-203ENST00000482098 NISCHQ9Y2I1 1504 aa17.96■□□□□ 0.47
LINC00888-203ENST00000482098 PPP6R1Q9UPN7 881 aa17.69■□□□□ 0.42
LINC00888-203ENST00000482098 FOXD1Q16676 465 aa17.51■□□□□ 0.39
LINC00888-203ENST00000482098 CSRNP3Q8WYN3 585 aa17.42■□□□□ 0.38
LINC00888-203ENST00000482098 SLC4A1APQ9BWU0 796 aaKnown RBP17.42■□□□□ 0.38
LINC00888-203ENST00000482098 PPP4R3CPQ6ZMV5 832 aa17.19■□□□□ 0.34
LINC00888-203ENST00000482098 NCBP3Q53F19 620 aaKnown RBP17.14■□□□□ 0.33
LINC00888-203ENST00000482098 PIAS4Q8N2W9 510 aaPredicted RBP16.84■□□□□ 0.29
LINC00888-203ENST00000482098 NPM3O75607 178 aaKnown RBP16.8■□□□□ 0.28
LINC00888-203ENST00000482098 ABCC9O60706 1549 aa16.7■□□□□ 0.26
LINC00888-203ENST00000482098 ZBTB22O15209 634 aa16.56■□□□□ 0.24
LINC00888-203ENST00000482098 SLC24A1O60721 1099 aa16.56■□□□□ 0.24
LINC00888-203ENST00000482098 CNKSR2Q8WXI2 1034 aa16.48■□□□□ 0.23
LINC00888-203ENST00000482098 SCAF1Q9H7N4 1312 aaKnown RBP16.38■□□□□ 0.21
LINC00888-203ENST00000482098 AMER1Q5JTC6 1135 aaPredicted RBP16.33■□□□□ 0.2
LINC00888-203ENST00000482098 FOXD4L1Q9NU39 408 aa16.32■□□□□ 0.2
LINC00888-203ENST00000482098 CCDC180Q9P1Z9 1646 aa16.28■□□□□ 0.2
LINC00888-203ENST00000482098 RTN4Q9NQC3 1192 aaKnown RBP16.25■□□□□ 0.19
LINC00888-203ENST00000482098 DNAJC5BQ9UF47 199 aa16.14■□□□□ 0.17
LINC00888-203ENST00000482098 RNF216Q9NWF9 866 aaPredicted RBP15.88■□□□□ 0.13
LINC00888-203ENST00000482098 MSH5O43196 834 aa15.8■□□□□ 0.12
LINC00888-203ENST00000482098 MAPK8IP2Q13387 824 aaPredicted RBP15.78■□□□□ 0.12
LINC00888-203ENST00000482098 RB1CC1Q8TDY2 1594 aa15.75■□□□□ 0.11
LINC00888-203ENST00000482098 FKBP8Q14318 412 aa15.73■□□□□ 0.11
LINC00888-203ENST00000482098 ATXN8OSP0DMR3 200 aa15.67■□□□□ 0.1
LINC00888-203ENST00000482098 NACADO15069 1562 aa15.58■□□□□ 0.08
LINC00888-203ENST00000482098 SLC4A2P04920 1241 aa15.55■□□□□ 0.08
LINC00888-203ENST00000482098 MYCNP04198 464 aaPredicted RBP15.54■□□□□ 0.08
LINC00888-203ENST00000482098 HOXD11P31277 338 aaPredicted RBP15.49■□□□□ 0.07
LINC00888-203ENST00000482098 PABPN1Q86U42 306 aaKnown RBP eCLIP15.48■□□□□ 0.07
LINC00888-203ENST00000482098 DMRT2Q9Y5R5 561 aa15.38■□□□□ 0.05
LINC00888-203ENST00000482098 MYO15BQ96JP2 1530 aa15.29■□□□□ 0.04
LINC00888-203ENST00000482098 DCAF8L2P0C7V8 631 aa15.28■□□□□ 0.04
LINC00888-203ENST00000482098 BICRAQ9NZM4 1560 aa15.27■□□□□ 0.03
LINC00888-203ENST00000482098 DNAJC5Q9H3Z4 198 aa15.25■□□□□ 0.03
LINC00888-203ENST00000482098 UNC13AQ9UPW8 1703 aa15.22■□□□□ 0.03
LINC00888-203ENST00000482098 SHROOM4Q9ULL8 1493 aa15.19■□□□□ 0.02
LINC00888-203ENST00000482098 CECR2Q9BXF3 1484 aa15.15■□□□□ 0.02
LINC00888-203ENST00000482098 CC2D2AQ9P2K1 1620 aa15.06■□□□□ 0
LINC00888-203ENST00000482098 PLCB2Q00722 1185 aa14.98□□□□□ -0.01
LINC00888-203ENST00000482098 EIF4G1Q04637 1599 aaKnown RBP14.95□□□□□ -0.02
LINC00888-203ENST00000482098 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.95□□□□□ -0.02
LINC00888-203ENST00000482098 HNRNPUL2Q1KMD3 747 aaKnown RBP14.95□□□□□ -0.02
LINC00888-203ENST00000482098 ATF5Q9Y2D1 282 aaPredicted RBP14.95□□□□□ -0.02
LINC00888-203ENST00000482098 FBXO3Q9UK99 471 aa14.94□□□□□ -0.02
LINC00888-203ENST00000482098 SAMD1Q6SPF0 538 aaPredicted RBP14.92□□□□□ -0.02
LINC00888-203ENST00000482098 DCAF1Q9Y4B6 1507 aa14.89□□□□□ -0.03
LINC00888-203ENST00000482098 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.84□□□□□ -0.03
LINC00888-203ENST00000482098 HAP1P54257 671 aaPredicted RBP14.81□□□□□ -0.04
LINC00888-203ENST00000482098 ZCCHC6Q5VYS8 1495 aaKnown RBP14.78□□□□□ -0.04
LINC00888-203ENST00000482098 BCANQ96GW7 911 aa14.77□□□□□ -0.05
LINC00888-203ENST00000482098 DCAF8L1A6NGE4 600 aa14.73□□□□□ -0.05
LINC00888-203ENST00000482098 SCRIBQ14160 1630 aa14.73□□□□□ -0.05
LINC00888-203ENST00000482098 CUX2O14529 1486 aa14.7□□□□□ -0.06
LINC00888-203ENST00000482098 SPDYE4A6NLX3 237 aa14.67□□□□□ -0.06
LINC00888-203ENST00000482098 ZNF219Q9P2Y4 722 aaPredicted RBP14.66□□□□□ -0.06
LINC00888-203ENST00000482098 U3KPZ7 1027 aaPredicted RBP14.64□□□□□ -0.07
LINC00888-203ENST00000482098 VASPP50552 380 aaPredicted RBP14.63□□□□□ -0.07
LINC00888-203ENST00000482098 VSIG10Q8N0Z9 540 aa14.62□□□□□ -0.07
LINC00888-203ENST00000482098 APLP2Q06481 763 aa14.56□□□□□ -0.08
LINC00888-203ENST00000482098 TAOK2Q9UL54 1235 aa14.56□□□□□ -0.08
LINC00888-203ENST00000482098 PRKCSHP14314 528 aaPredicted RBP14.55□□□□□ -0.08
LINC00888-203ENST00000482098 PROM2Q8N271 834 aa14.51□□□□□ -0.09
LINC00888-203ENST00000482098 IFNLR1Q8IU57 520 aaPredicted RBP14.49□□□□□ -0.09
LINC00888-203ENST00000482098 ERCC6Q03468 1493 aa14.49□□□□□ -0.09
LINC00888-203ENST00000482098 PKD2Q13563 968 aa14.42□□□□□ -0.1
LINC00888-203ENST00000482098 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.42□□□□□ -0.1
LINC00888-203ENST00000482098 NCAPD3P42695 1498 aa14.42□□□□□ -0.1
LINC00888-203ENST00000482098 FBLN2P98095 1184 aa14.39□□□□□ -0.11
LINC00888-203ENST00000482098 MKRN4PQ13434 485 aaPredicted RBP14.37□□□□□ -0.11
LINC00888-203ENST00000482098 TPRNQ4KMQ1 711 aa14.33□□□□□ -0.12
LINC00888-203ENST00000482098 BBXQ8WY36 941 aaPredicted RBP14.33□□□□□ -0.12
LINC00888-203ENST00000482098 ATAD2BQ9ULI0 1458 aa14.25□□□□□ -0.13
LINC00888-203ENST00000482098 KDM2AQ9Y2K7 1162 aa14.25□□□□□ -0.13
LINC00888-203ENST00000482098 PAXIP1Q6ZW49 1069 aaPredicted RBP14.24□□□□□ -0.13
LINC00888-203ENST00000482098 TRIM41Q8WV44 630 aa14.24□□□□□ -0.13
LINC00888-203ENST00000482098 HMGXB3Q12766 1538 aa14.22□□□□□ -0.13
LINC00888-203ENST00000482098 CFAP44Q96MT7 982 aa14.21□□□□□ -0.13
LINC00888-203ENST00000482098 ECM2O94769 699 aaPredicted RBP14.2□□□□□ -0.14
LINC00888-203ENST00000482098 KLHL34Q8N239 644 aa14.2□□□□□ -0.14
LINC00888-203ENST00000482098 SMARCA2P51531 1590 aa14.2□□□□□ -0.14
LINC00888-203ENST00000482098 SPOCK2Q92563 424 aa14.19□□□□□ -0.14
LINC00888-203ENST00000482098 NESP48681 1621 aa14.19□□□□□ -0.14
LINC00888-203ENST00000482098 THOC2Q8NI27 1593 aaKnown RBP14.16□□□□□ -0.14
LINC00888-203ENST00000482098 NPM1P06748 294 aaKnown RBP eCLIP14.11□□□□□ -0.15
LINC00888-203ENST00000482098 LAMC3Q9Y6N6 1575 aa14.11□□□□□ -0.15
LINC00888-203ENST00000482098 PDS5BQ9NTI5 1447 aa14.1□□□□□ -0.15
LINC00888-203ENST00000482098 SPRYD3Q8NCJ5 442 aa14.1□□□□□ -0.15
LINC00888-203ENST00000482098 POLA2Q14181 598 aa14.07□□□□□ -0.16
LINC00888-203ENST00000482098 BAZ1BQ9UIG0 1483 aaKnown RBP14.06□□□□□ -0.16
LINC00888-203ENST00000482098 TRHP20396 242 aaPredicted RBP14.06□□□□□ -0.16
LINC00888-203ENST00000482098 SMARCA4P51532 1647 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 143.3 ms