Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.89■□□□□ 0.61
RNF220Q5VTB9 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.89■□□□□ 0.61
RNF220Q5VTB9 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
RNF220Q5VTB9 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
RNF220Q5VTB9 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.89■□□□□ 0.61
RNF220Q5VTB9 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF220Q5VTB9 AC139713.2-201ENST00000641328 2723 ntBASIC18.89■□□□□ 0.61
RNF220Q5VTB9 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RNF220Q5VTB9 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF220Q5VTB9 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF220Q5VTB9 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RNF220Q5VTB9 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.89■□□□□ 0.61
RNF220Q5VTB9 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RNF220Q5VTB9 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF220Q5VTB9 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF220Q5VTB9 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RNF220Q5VTB9 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
RNF220Q5VTB9 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 AC091799.1-201ENST00000422823 811 ntBASIC18.88■□□□□ 0.61
RNF220Q5VTB9 AC097381.1-201ENST00000429019 1296 ntBASIC18.88■□□□□ 0.61
RNF220Q5VTB9 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF220Q5VTB9 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 AC034268.1-201ENST00000441047 882 ntBASIC18.87■□□□□ 0.61
RNF220Q5VTB9 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 AC079598.2-202ENST00000546624 1451 ntBASIC18.87■□□□□ 0.61
RNF220Q5VTB9 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 AC099398.1-201ENST00000567919 2776 ntBASIC18.87■□□□□ 0.61
RNF220Q5VTB9 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RNF220Q5VTB9 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 UBE2DNL-204ENST00000602536 740 ntBASIC18.86■□□□□ 0.61
RNF220Q5VTB9 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF220Q5VTB9 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms