Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SHROOM1Q2M3G4 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
SHROOM1Q2M3G4 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC23.03■■□□□ 1.28
SHROOM1Q2M3G4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
SHROOM1Q2M3G4 AC092865.7-201ENST00000641832 219 ntBASIC23.03■■□□□ 1.28
SHROOM1Q2M3G4 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC23.03■■□□□ 1.28
SHROOM1Q2M3G4 TMEM179-206ENST00000616017 1645 ntBASIC23.03■■□□□ 1.28
SHROOM1Q2M3G4 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SHROOM1Q2M3G4 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SHROOM1Q2M3G4 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
SHROOM1Q2M3G4 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SHROOM1Q2M3G4 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SHROOM1Q2M3G4 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
SHROOM1Q2M3G4 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC23.03■■□□□ 1.28
SHROOM1Q2M3G4 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHROOM1Q2M3G4 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHROOM1Q2M3G4 LINC01465-201ENST00000408887 1940 ntBASIC23.02■■□□□ 1.28
SHROOM1Q2M3G4 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
SHROOM1Q2M3G4 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHROOM1Q2M3G4 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHROOM1Q2M3G4 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC23.02■■□□□ 1.28
SHROOM1Q2M3G4 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHROOM1Q2M3G4 CRAT-202ENST00000393384 973 ntTSL 2 BASIC23.02■■□□□ 1.28
SHROOM1Q2M3G4 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHROOM1Q2M3G4 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHROOM1Q2M3G4 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHROOM1Q2M3G4 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHROOM1Q2M3G4 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC23.02■■□□□ 1.28
SHROOM1Q2M3G4 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHROOM1Q2M3G4 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.27
SHROOM1Q2M3G4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 FSCN1P1-201ENST00000568912 1481 ntBASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 SLC25A3P1-201ENST00000443844 931 ntBASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 CFL2-205ENST00000555765 632 ntTSL 2 BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 AC026271.3-201ENST00000571884 352 ntBASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC23.01■■□□□ 1.27
SHROOM1Q2M3G4 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 AL691432.2-201ENST00000607222 2038 ntBASIC23■■□□□ 1.27
SHROOM1Q2M3G4 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 RCC2P6-201ENST00000526625 1557 ntBASIC23■■□□□ 1.27
SHROOM1Q2M3G4 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC23■■□□□ 1.27
SHROOM1Q2M3G4 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
SHROOM1Q2M3G4 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC22.99■■□□□ 1.27
SHROOM1Q2M3G4 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SHROOM1Q2M3G4 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SHROOM1Q2M3G4 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC22.99■■□□□ 1.27
SHROOM1Q2M3G4 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC22.99■■□□□ 1.27
SHROOM1Q2M3G4 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC22.99■■□□□ 1.27
SHROOM1Q2M3G4 ECEL1P2-202ENST00000465689 757 ntBASIC22.99■■□□□ 1.27
SHROOM1Q2M3G4 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC22.99■■□□□ 1.27
SHROOM1Q2M3G4 AP005212.1-201ENST00000581547 1997 ntBASIC22.99■■□□□ 1.27
SHROOM1Q2M3G4 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SHROOM1Q2M3G4 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SHROOM1Q2M3G4 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SHROOM1Q2M3G4 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
SHROOM1Q2M3G4 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
SHROOM1Q2M3G4 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SHROOM1Q2M3G4 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SHROOM1Q2M3G4 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
SHROOM1Q2M3G4 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
SHROOM1Q2M3G4 CRYGFP-201ENST00000418459 633 ntBASIC22.98■■□□□ 1.27
SHROOM1Q2M3G4 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC22.98■■□□□ 1.27
SHROOM1Q2M3G4 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC22.98■■□□□ 1.27
SHROOM1Q2M3G4 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC22.98■■□□□ 1.27
SHROOM1Q2M3G4 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC22.98■■□□□ 1.27
SHROOM1Q2M3G4 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SHROOM1Q2M3G4 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC22.98■■□□□ 1.27
SHROOM1Q2M3G4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms