Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
SOX3P41225 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 PTBP1P-201ENST00000554374 1601 ntBASIC18.49■□□□□ 0.55
SOX3P41225 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SOX3P41225 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.49■□□□□ 0.55
SOX3P41225 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.49■□□□□ 0.55
SOX3P41225 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SOX3P41225 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.48■□□□□ 0.55
SOX3P41225 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.48■□□□□ 0.55
SOX3P41225 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.48■□□□□ 0.55
SOX3P41225 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.48■□□□□ 0.55
SOX3P41225 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SOX3P41225 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.48■□□□□ 0.55
SOX3P41225 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SOX3P41225 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.48■□□□□ 0.55
SOX3P41225 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SOX3P41225 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.48■□□□□ 0.55
SOX3P41225 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
SOX3P41225 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.48■□□□□ 0.55
SOX3P41225 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SOX3P41225 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.48■□□□□ 0.55
SOX3P41225 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SOX3P41225 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.48■□□□□ 0.55
SOX3P41225 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 DPP3P2-201ENST00000416030 1696 ntBASIC18.47■□□□□ 0.55
SOX3P41225 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.47■□□□□ 0.55
SOX3P41225 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.47■□□□□ 0.55
SOX3P41225 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.47■□□□□ 0.55
SOX3P41225 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.47■□□□□ 0.55
SOX3P41225 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.47■□□□□ 0.55
SOX3P41225 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
SOX3P41225 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.47■□□□□ 0.55
SOX3P41225 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.47■□□□□ 0.55
SOX3P41225 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.47■□□□□ 0.55
SOX3P41225 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SOX3P41225 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.47■□□□□ 0.55
SOX3P41225 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.47■□□□□ 0.55
SOX3P41225 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.47■□□□□ 0.55
SOX3P41225 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.47■□□□□ 0.55
SOX3P41225 AC116562.4-201ENST00000641316 2276 ntBASIC18.47■□□□□ 0.55
SOX3P41225 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.47■□□□□ 0.55
SOX3P41225 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.47■□□□□ 0.55
SOX3P41225 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.47■□□□□ 0.55
SOX3P41225 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SOX3P41225 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.47■□□□□ 0.55
SOX3P41225 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.46■□□□□ 0.55
SOX3P41225 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
SOX3P41225 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SOX3P41225 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SOX3P41225 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.46■□□□□ 0.55
SOX3P41225 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.46■□□□□ 0.55
SOX3P41225 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
SOX3P41225 GCSHP5-201ENST00000443090 522 ntBASIC18.46■□□□□ 0.55
SOX3P41225 RPS2P52-201ENST00000469610 820 ntBASIC18.46■□□□□ 0.55
SOX3P41225 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.46■□□□□ 0.55
SOX3P41225 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.46■□□□□ 0.55
SOX3P41225 AC142381.4-202ENST00000563973 229 ntBASIC18.46■□□□□ 0.55
SOX3P41225 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.46■□□□□ 0.55
SOX3P41225 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SOX3P41225 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SOX3P41225 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.46■□□□□ 0.55
SOX3P41225 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SOX3P41225 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SOX3P41225 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SOX3P41225 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SOX3P41225 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.46■□□□□ 0.55
SOX3P41225 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SOX3P41225 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SOX3P41225 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SOX3P41225 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.46■□□□□ 0.55
SOX3P41225 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
SOX3P41225 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
SOX3P41225 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.46■□□□□ 0.54
SOX3P41225 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SOX3P41225 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SOX3P41225 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.45■□□□□ 0.54
SOX3P41225 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.45■□□□□ 0.54
SOX3P41225 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SOX3P41225 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
SOX3P41225 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms