Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.335e-7■■■□□ 15.2
YBX3P16989 FBXO18-202ENST00000379999 3702 ntTSL 1 (best) BASIC11.01□□□□□ -0.655e-7■■■□□ 15.2
YBX3P16989 MKI67-202ENST00000368654 12678 ntAPPRIS P3 TSL 2 BASIC9.36□□□□□ -0.911e-6■■■□□ 15.2
YBX3P16989 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.461e-6■■■□□ 15.2
YBX3P16989 MMS19-207ENST00000434538 2164 ntTSL 212.17□□□□□ -0.462e-6■■■□□ 15.2
YBX3P16989 MTOR-201ENST00000361445 8677 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.865e-7■■■□□ 15.2
YBX3P16989 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.983e-8■■■□□ 15.2
YBX3P16989 YWHAZ-221ENST00000523131 567 ntTSL 529.24■■■□□ 2.273e-18■■■□□ 15.2
YBX3P16989 YWHAZ-208ENST00000418997 996 ntTSL 229.18■■■□□ 2.263e-18■■■□□ 15.2
YBX3P16989 YWHAZ-223ENST00000523938 626 ntTSL 525.94■■□□□ 1.743e-18■■■□□ 15.2
YBX3P16989 YWHAZ-210ENST00000437293 701 ntTSL 325.36■■□□□ 1.653e-18■■■□□ 15.2
YBX3P16989 YWHAZ-212ENST00000480304 2247 ntTSL 211.27□□□□□ -0.613e-18■■■□□ 15.2
YBX3P16989 YWHAZ-202ENST00000395948 812 ntTSL 3 BASIC10.65□□□□□ -0.73e-18■■■□□ 15.2
YBX3P16989 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC24.22■■□□□ 1.471e-6■■■□□ 15.2
YBX3P16989 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC20.77■□□□□ 0.921e-6■■■□□ 15.2
YBX3P16989 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.5■□□□□ 0.711e-6■■■□□ 15.2
YBX3P16989 POLR1D-204ENST00000465887 2118 ntTSL 218.97■□□□□ 0.631e-6■■■□□ 15.2
YBX3P16989 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.75■□□□□ 0.591e-6■■■□□ 15.2
YBX3P16989 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.58■□□□□ 0.41e-6■■■□□ 15.2
YBX3P16989 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.81□□□□□ -1.321e-6■■■□□ 15.2
YBX3P16989 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.06■□□□□ 0.327e-7■■■□□ 15.2
YBX3P16989 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC14.23□□□□□ -0.137e-7■■■□□ 15.2
YBX3P16989 PSME3-217ENST00000622892 3183 ntTSL 1 (best) BASIC13.87□□□□□ -0.197e-7■■■□□ 15.2
YBX3P16989 PSME3-205ENST00000545225 3082 ntTSL 2 BASIC12.18□□□□□ -0.467e-7■■■□□ 15.2
YBX3P16989 PSME3-201ENST00000293362 3144 ntTSL 1 (best) BASIC11.22□□□□□ -0.617e-7■■■□□ 15.2
YBX3P16989 AC079801.1-201ENST00000623753 388 ntTSL 3 BASIC12.24□□□□□ -0.459e-11■■■□□ 15.2
YBX3P16989 TNNT1-216ENST00000593046 800 ntTSL 218.61■□□□□ 0.572e-10■■■□□ 15.2
YBX3P16989 TNNT1-215ENST00000592920 583 ntTSL 517.88■□□□□ 0.452e-10■■■□□ 15.2
YBX3P16989 TNNT1-210ENST00000588147 489 ntTSL 1 (best)17.72■□□□□ 0.432e-10■■■□□ 15.2
YBX3P16989 TNNT1-213ENST00000589226 604 ntTSL 217.48■□□□□ 0.392e-10■■■□□ 15.2
YBX3P16989 MYH9-205ENST00000463027 562 ntTSL 316.9■□□□□ 0.33e-6■■■□□ 15.2
YBX3P16989 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.381e-8■■■□□ 15.2
YBX3P16989 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.373e-7■■■□□ 15.2
YBX3P16989 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC6.94□□□□□ -1.33e-7■■■□□ 15.2
YBX3P16989 NOP53-209ENST00000599253 689 ntTSL 216.48■□□□□ 0.239e-25■■■□□ 15.2
YBX3P16989 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC27.75■■■□□ 2.032e-6■■■□□ 15.2
YBX3P16989 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.072e-6■■■□□ 15.2
YBX3P16989 FAM102B-203ENST00000483371 8333 ntTSL 22.57□□□□□ -22e-6■■■□□ 15.2
YBX3P16989 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.293e-8■■■□□ 15.2
YBX3P16989 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.319e-10■■■□□ 15.2
YBX3P16989 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.089e-10■■■□□ 15.2
YBX3P16989 BRD2-212ENST00000482914 4834 ntTSL 1 (best)14.27□□□□□ -0.139e-10■■■□□ 15.2
YBX3P16989 RTFDC1-207ENST00000477573 2193 ntTSL 1 (best)12.98□□□□□ -0.333e-7■■■□□ 15.2
YBX3P16989 FAM209A-202ENST00000481560 666 ntTSL 59.61□□□□□ -0.873e-7■■■□□ 15.2
YBX3P16989 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.18■□□□□ 0.821e-7■■■□□ 15.2
YBX3P16989 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.631e-7■■■□□ 15.2
YBX3P16989 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.481e-7■■■□□ 15.2
YBX3P16989 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.95■□□□□ 0.31e-7■■■□□ 15.2
YBX3P16989 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.061e-7■■■□□ 15.2
YBX3P16989 IPO7-201ENST00000379719 6191 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.441e-7■■■□□ 15.2
YBX3P16989 QARS-202ENST00000414533 2412 ntTSL 2 BASIC13.47□□□□□ -0.252e-9■■■□□ 15.2
YBX3P16989 QARS-205ENST00000430182 2399 ntTSL 212.69□□□□□ -0.382e-9■■■□□ 15.2
YBX3P16989 QARS-201ENST00000306125 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.562e-9■■■□□ 15.2
YBX3P16989 SSRP1-202ENST00000293880 6296 ntTSL 216.33■□□□□ 0.21e-7■■■□□ 15.2
YBX3P16989 SSRP1-201ENST00000278412 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.221e-7■■■□□ 15.2
YBX3P16989 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.866e-9■■■□□ 15.2
YBX3P16989 TRIP13-204ENST00000509210 303 ntTSL 39.99□□□□□ -0.813e-7■■■□□ 15.2
YBX3P16989 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.126e-7■■■□□ 15.2
YBX3P16989 IGF2BP2-204ENST00000457616 3426 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.276e-7■■■□□ 15.2
YBX3P16989 IGF2BP2-201ENST00000346192 3291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.366e-7■■■□□ 15.2
YBX3P16989 RPS19-205ENST00000598466 601 ntTSL 214.33□□□□□ -0.123e-67■■■□□ 15.2
YBX3P16989 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC21.97■■□□□ 1.115e-8■■■□□ 15.2
YBX3P16989 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC16.53■□□□□ 0.245e-8■■■□□ 15.2
YBX3P16989 PCGF2-205ENST00000618506 1196 ntTSL 5 BASIC15.71■□□□□ 0.115e-8■■■□□ 15.2
YBX3P16989 PCGF2-204ENST00000616199 3062 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.155e-8■■■□□ 15.2
YBX3P16989 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.25e-8■■■□□ 15.2
YBX3P16989 PCGF2-207ENST00000620225 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.535e-8■■■□□ 15.2
YBX3P16989 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.342e-8■■■□□ 15.2
YBX3P16989 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.312e-8■■■□□ 15.2
YBX3P16989 AP3D1-208ENST00000590683 723 ntTSL 513.28□□□□□ -0.282e-8■■■□□ 15.2
YBX3P16989 ESYT2-202ENST00000275418 3251 ntAPPRIS ALT2 TSL 520.99■□□□□ 0.959e-8■■■□□ 15.2
YBX3P16989 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.429e-8■■■□□ 15.2
YBX3P16989 GLO1-201ENST00000373365 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.121e-8■■■□□ 15.2
YBX3P16989 PPP6C-204ENST00000456642 569 ntTSL 39.19□□□□□ -0.948e-7■■■□□ 15.2
YBX3P16989 MARCH6-210ENST00000511802 4734 ntTSL 28.2□□□□□ -1.13e-9■■■□□ 15.2
YBX3P16989 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.343e-9■■■□□ 15.2
YBX3P16989 QARS-214ENST00000478561 670 ntTSL 319.03■□□□□ 0.641e-14■■■□□ 15.2
YBX3P16989 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.543e-6■■■□□ 15.2
YBX3P16989 PES1-204ENST00000402284 2144 ntTSL 5 BASIC18.1■□□□□ 0.493e-6■■■□□ 15.2
YBX3P16989 PES1-206ENST00000406208 871 ntTSL 517.06■□□□□ 0.323e-6■■■□□ 15.2
YBX3P16989 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.213e-6■■■□□ 15.2
YBX3P16989 PES1-205ENST00000405677 2708 ntTSL 2 BASIC13.29□□□□□ -0.283e-6■■■□□ 15.2
YBX3P16989 PES1-203ENST00000402281 2760 ntTSL 2 BASIC12.46□□□□□ -0.413e-6■■■□□ 15.2
YBX3P16989 ZHX1-C8orf76-202ENST00000622816 581 ntAPPRIS ALT2 TSL 424.24■■□□□ 1.472e-6■■■□□ 15.2
YBX3P16989 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.132e-6■■■□□ 15.2
YBX3P16989 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.222e-6■■■□□ 15.2
YBX3P16989 ZHX1-206ENST00000522655 3357 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.682e-6■■■□□ 15.2
YBX3P16989 ZHX1-204ENST00000517516 780 ntTSL 38.92□□□□□ -0.982e-6■■■□□ 15.2
YBX3P16989 RPL36AL-201ENST00000298289 746 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.094e-15■■■□□ 15.2
YBX3P16989 TBC1D14-208ENST00000451522 4149 ntAPPRIS ALT1 TSL 5 BASIC13.41□□□□□ -0.261e-7■■■□□ 15.2
YBX3P16989 TBC1D14-202ENST00000410031 4201 ntTSL 5 BASIC9.94□□□□□ -0.821e-7■■■□□ 15.2
YBX3P16989 TBC1D14-206ENST00000446947 4021 ntTSL 5 BASIC9.69□□□□□ -0.861e-7■■■□□ 15.2
YBX3P16989 EIF1-204ENST00000469308 815 ntTSL 229.82■■■□□ 2.364e-21■■■□□ 15.2
YBX3P16989 SREBF2-203ENST00000435061 770 ntTSL 323.29■■□□□ 1.322e-7■■■□□ 15.2
YBX3P16989 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.54■□□□□ 0.722e-7■■■□□ 15.2
YBX3P16989 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.52e-7■■■□□ 15.2
YBX3P16989 SREBF2-202ENST00000424354 5699 ntTSL 1 (best)13.96□□□□□ -0.172e-7■■■□□ 15.2
YBX3P16989 SREBF2-208ENST00000491541 4043 ntTSL 1 (best)11.04□□□□□ -0.642e-7■■■□□ 15.2
YBX3P16989 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.342e-7■■■□□ 15.2
YBX3P16989 CSNK2A2-205ENST00000566813 1569 ntTSL 512.6□□□□□ -0.392e-7■■■□□ 15.2
Retrieved 100 of 29,075 protein–RNA pairs in 299.6 ms