Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC15.23■□□□□ 0.03
CXCL1P09341 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL1P09341 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL1P09341 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
CXCL1P09341 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL1P09341 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC15.23■□□□□ 0.03
CXCL1P09341 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL1P09341 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC15.23■□□□□ 0.03
CXCL1P09341 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL1P09341 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
CXCL1P09341 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL1P09341 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 EXOC3-AS1-202ENST00000623673 1663 ntBASIC15.22■□□□□ 0.03
CXCL1P09341 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC15.22■□□□□ 0.03
CXCL1P09341 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CXCL1P09341 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
CXCL1P09341 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CXCL1P09341 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC15.22■□□□□ 0.03
CXCL1P09341 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC15.22■□□□□ 0.03
CXCL1P09341 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC15.22■□□□□ 0.03
CXCL1P09341 QDPR-206ENST00000508623 601 ntTSL 3 BASIC15.22■□□□□ 0.03
CXCL1P09341 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC15.22■□□□□ 0.03
CXCL1P09341 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC15.22■□□□□ 0.03
CXCL1P09341 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC15.22■□□□□ 0.03
CXCL1P09341 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL1P09341 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL1P09341 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL1P09341 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL1P09341 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC15.21■□□□□ 0.03
CXCL1P09341 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC15.21■□□□□ 0.03
CXCL1P09341 EFTUD1P1-204ENST00000560401 1798 ntBASIC15.21■□□□□ 0.03
CXCL1P09341 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC15.21■□□□□ 0.03
CXCL1P09341 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC15.21■□□□□ 0.03
CXCL1P09341 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL1P09341 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
CXCL1P09341 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL1P09341 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CXCL1P09341 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL1P09341 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC15.21■□□□□ 0.03
CXCL1P09341 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL1P09341 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CXCL1P09341 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL1P09341 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CXCL1P09341 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL1P09341 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC15.21■□□□□ 0.03
CXCL1P09341 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL1P09341 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
CXCL1P09341 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CXCL1P09341 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL1P09341 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC15.21■□□□□ 0.03
CXCL1P09341 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.21■□□□□ 0.03
CXCL1P09341 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL1P09341 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL1P09341 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CXCL1P09341 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CXCL1P09341 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC15.21■□□□□ 0.02
CXCL1P09341 AC055733.4-201ENST00000638462 1354 ntBASIC15.21■□□□□ 0.02
CXCL1P09341 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
CXCL1P09341 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CXCL1P09341 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CXCL1P09341 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC15.21■□□□□ 0.02
CXCL1P09341 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC15.21■□□□□ 0.02
CXCL1P09341 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CXCL1P09341 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CXCL1P09341 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC15.21■□□□□ 0.02
CXCL1P09341 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CXCL1P09341 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL1P09341 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CXCL1P09341 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC15.2■□□□□ 0.02
CXCL1P09341 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL1P09341 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CXCL1P09341 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC15.2■□□□□ 0.02
CXCL1P09341 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL1P09341 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL1P09341 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CXCL1P09341 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.2■□□□□ 0.02
CXCL1P09341 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL1P09341 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL1P09341 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL1P09341 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL1P09341 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL1P09341 CD276-203ENST00000537340 2439 ntTSL 2 BASIC15.2■□□□□ 0.02
CXCL1P09341 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms