Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
HMGB3O15347 AP004607.4-201ENST00000530158 1459 ntBASIC15.84■□□□□ 0.13
HMGB3O15347 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB3O15347 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC15.84■□□□□ 0.13
HMGB3O15347 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
HMGB3O15347 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
HMGB3O15347 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC15.83■□□□□ 0.13
HMGB3O15347 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HMGB3O15347 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HMGB3O15347 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
HMGB3O15347 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
HMGB3O15347 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HMGB3O15347 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB3O15347 RARRES2P1-201ENST00000474487 481 ntBASIC15.83■□□□□ 0.12
HMGB3O15347 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGB3O15347 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGB3O15347 MIR3621-201ENST00000580529 85 ntBASIC15.83■□□□□ 0.12
HMGB3O15347 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
HMGB3O15347 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB3O15347 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB3O15347 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
HMGB3O15347 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB3O15347 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB3O15347 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
HMGB3O15347 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB3O15347 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB3O15347 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB3O15347 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB3O15347 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB3O15347 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB3O15347 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
HMGB3O15347 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
HMGB3O15347 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB3O15347 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGB3O15347 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB3O15347 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB3O15347 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB3O15347 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB3O15347 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
HMGB3O15347 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
HMGB3O15347 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB3O15347 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB3O15347 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB3O15347 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB3O15347 QDPR-206ENST00000508623 601 ntTSL 3 BASIC15.82■□□□□ 0.12
HMGB3O15347 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC15.82■□□□□ 0.12
HMGB3O15347 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
HMGB3O15347 AL138724.1-201ENST00000606771 1088 ntBASIC15.82■□□□□ 0.12
HMGB3O15347 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB3O15347 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB3O15347 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB3O15347 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB3O15347 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB3O15347 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB3O15347 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB3O15347 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB3O15347 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB3O15347 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB3O15347 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB3O15347 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HMGB3O15347 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB3O15347 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
HMGB3O15347 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGB3O15347 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB3O15347 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGB3O15347 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB3O15347 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB3O15347 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGB3O15347 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGB3O15347 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB3O15347 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB3O15347 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC15.81■□□□□ 0.12
HMGB3O15347 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGB3O15347 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB3O15347 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB3O15347 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC15.81■□□□□ 0.12
HMGB3O15347 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGB3O15347 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HMGB3O15347 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB3O15347 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB3O15347 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB3O15347 FZD10-202ENST00000539839 3282 ntBASIC15.81■□□□□ 0.12
HMGB3O15347 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB3O15347 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB3O15347 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB3O15347 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
HMGB3O15347 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
HMGB3O15347 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB3O15347 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
HMGB3O15347 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB3O15347 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB3O15347 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB3O15347 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB3O15347 TMEM179-206ENST00000616017 1645 ntBASIC15.8■□□□□ 0.12
HMGB3O15347 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB3O15347 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HMGB3O15347 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB3O15347 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC15.8■□□□□ 0.12
HMGB3O15347 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB3O15347 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms