Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 ENSAP3-201ENST00000312710 333 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 OR6N2-201ENST00000339258 954 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 RN7SKP6-201ENST00000364795 319 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 RN7SKP48-201ENST00000365031 328 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 RNU4-20P-201ENST00000365601 151 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 CBWD5-205ENST00000377395 1143 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 APLF-202ENST00000394342 1182 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AC068050.1-201ENST00000394891 380 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 MRPL42P3-201ENST00000401492 326 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 RPL6P29-201ENST00000414863 865 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AC099066.1-201ENST00000428148 534 ntTSL 5 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 SRIP2-201ENST00000428470 166 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 Z98747.1-201ENST00000438791 356 ntTSL 3 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AL138881.1-201ENST00000443445 789 ntTSL 3 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AC044784.1-201ENST00000456526 677 ntTSL 3 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 RN7SL74P-201ENST00000464966 299 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AC112206.1-201ENST00000468416 477 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 RN7SL841P-201ENST00000470547 297 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AC117395.3-201ENST00000471176 680 ntTSL 4 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 RN7SL448P-201ENST00000475566 295 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 GAPDHP22-201ENST00000491037 413 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AC112204.1-201ENST00000502591 103 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 LINC02121-201ENST00000507950 432 ntTSL 2 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 NPM1P41-201ENST00000512920 831 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AC011352.2-201ENST00000514574 1016 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 IGHVIII-67-3-201ENST00000517650 232 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AC008429.4-201ENST00000521201 182 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AC006206.2-201ENST00000537192 992 ntTSL 4 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AL133304.3-201ENST00000550089 477 ntTSL 3 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 STX8-209ENST00000574431 731 ntTSL 3 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 CKS1BP3-201ENST00000600888 237 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AL121928.1-201ENST00000608017 521 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 PTCHD3P1-201ENST00000612350 537 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AC097641.3-201ENST00000613523 464 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AC016999.2-201ENST00000614692 556 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AC024559.2-202ENST00000615240 529 ntTSL 5 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 Metazoa_SRP.20-201ENST00000619896 275 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AL133216.2-202ENST00000634512 349 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 MIR3191-201ENST00000636300 76 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 LINC00598-212ENST00000637124 905 ntTSL 5 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 snoMe28S-Am2634.2-201ENST00000637869 80 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 NANOG-201ENST00000229307 5183 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 CD101-201ENST00000256652 3283 ntAPPRIS P1 TSL 2 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 CD46-206ENST00000360212 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 NELL2-202ENST00000395487 3203 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 SYTL4-204ENST00000372989 3885 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 ABHD4-203ENST00000428304 3366 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 CARF-216ENST00000444724 2854 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 MOSPD1-203ENST00000370783 2364 ntAPPRIS P2 TSL 1 (best) BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AC024132.1-201ENST00000382007 2509 ntTSL 2 BASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 AC145207.5-201ENST00000582866 2682 ntBASIC8.34□□□□□ -1.07
VPS9D1Q9Y2B5 FMO5-202ENST00000369272 2168 ntTSL 1 (best) BASIC8.34□□□□□ -1.08
VPS9D1Q9Y2B5 AC011369.1-201ENST00000517408 2181 ntTSL 3 BASIC8.34□□□□□ -1.08
VPS9D1Q9Y2B5 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC8.34□□□□□ -1.08
VPS9D1Q9Y2B5 AC006269.1-201ENST00000636752 2789 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 TOPORSLP1-201ENST00000467693 2102 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 TTC33-205ENST00000636106 2252 ntTSL 5 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 NFRKB-202ENST00000524746 4114 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 DHFR2-201ENST00000314636 3927 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 SCYL2-211ENST00000635101 3948 ntTSL 5 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 PDE4DIP-203ENST00000369349 4677 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC025580.2-204ENST00000560077 2399 ntTSL 5 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 CCNB2-205ENST00000621385 2503 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC131392.2-201ENST00000505635 4332 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 ZNF3-202ENST00000299667 2799 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 C14orf177-201ENST00000325812 1284 ntAPPRIS P2 TSL 2 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 OR9K1P-201ENST00000326513 941 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 MIR548XHG-201ENST00000355189 673 ntTSL 3 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 OR11H13P-201ENST00000359695 979 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 Y_RNA.291-201ENST00000364886 113 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 ZNF200-201ENST00000396868 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 KCNJ15-205ENST00000398930 2914 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 ANXA2P3-201ENST00000404883 1008 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 RN7SKP129-201ENST00000410288 299 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 RN7SKP247-201ENST00000411094 308 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC003087.1-201ENST00000412828 499 ntTSL 3 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 WRBP1-201ENST00000423352 334 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AL807761.3-201ENST00000427833 329 ntTSL 3 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 WWC3-AS1-201ENST00000430057 578 ntTSL 3 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 USP24P1-201ENST00000433802 779 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 SDHDP2-201ENST00000436937 465 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 FUNDC2P4-201ENST00000441207 421 ntBASIC8.33□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms