RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 AEBP2Q6ZN18 517 aaPredicted RBP19.2■□□□□ 0.66
CKS1BP3-201ENST00000600888 CHIC1Q5VXU3 224 aa18.78■□□□□ 0.6
CKS1BP3-201ENST00000600888 PHF23Q9BUL5 403 aaPredicted RBP16.55■□□□□ 0.24
CKS1BP3-201ENST00000600888 SENP3Q9H4L4 574 aaPredicted RBP16.27■□□□□ 0.2
CKS1BP3-201ENST00000600888 PLPPR3Q6T4P5 718 aa15.27■□□□□ 0.04
CKS1BP3-201ENST00000600888 FOXD1Q16676 465 aa15.1■□□□□ 0.01
CKS1BP3-201ENST00000600888 PPP6R1Q9UPN7 881 aa14.59□□□□□ -0.07
CKS1BP3-201ENST00000600888 ADRA2BP18089 450 aa14.58□□□□□ -0.08
CKS1BP3-201ENST00000600888 PIAS4Q8N2W9 510 aaPredicted RBP14.24□□□□□ -0.13
CKS1BP3-201ENST00000600888 MSH5O43196 834 aa13.9□□□□□ -0.18
CKS1BP3-201ENST00000600888 PPP4R3CPQ6ZMV5 832 aa13.47□□□□□ -0.25
CKS1BP3-201ENST00000600888 SCAF1Q9H7N4 1312 aaKnown RBP13.33□□□□□ -0.28
CKS1BP3-201ENST00000600888 KCNA4P22459 653 aa13.21□□□□□ -0.29
CKS1BP3-201ENST00000600888 MAPK8IP2Q13387 824 aaPredicted RBP13.21□□□□□ -0.29
CKS1BP3-201ENST00000600888 NCBP3Q53F19 620 aaKnown RBP13.13□□□□□ -0.31
CKS1BP3-201ENST00000600888 CNKSR2Q8WXI2 1034 aa13.08□□□□□ -0.32
CKS1BP3-201ENST00000600888 DMRT2Q9Y5R5 561 aa13□□□□□ -0.33
CKS1BP3-201ENST00000600888 NPM3O75607 178 aaKnown RBP12.94□□□□□ -0.34
CKS1BP3-201ENST00000600888 RNF216Q9NWF9 866 aaPredicted RBP12.81□□□□□ -0.36
CKS1BP3-201ENST00000600888 HOXD11P31277 338 aaPredicted RBP12.75□□□□□ -0.37
CKS1BP3-201ENST00000600888 POTEDQ86YR6 584 aa12.58□□□□□ -0.4
CKS1BP3-201ENST00000600888 SLC4A1APQ9BWU0 796 aaKnown RBP12.58□□□□□ -0.4
CKS1BP3-201ENST00000600888 DNAJC5BQ9UF47 199 aa12.56□□□□□ -0.4
CKS1BP3-201ENST00000600888 DCAF8L1A6NGE4 600 aa12.43□□□□□ -0.42
CKS1BP3-201ENST00000600888 EHMT2Q96KQ7 1210 aa12.27□□□□□ -0.45
CKS1BP3-201ENST00000600888 SLC4A2P04920 1241 aa12.21□□□□□ -0.45
CKS1BP3-201ENST00000600888 ZBTB22O15209 634 aa12.15□□□□□ -0.46
CKS1BP3-201ENST00000600888 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.15□□□□□ -0.46
CKS1BP3-201ENST00000600888 CSRNP3Q8WYN3 585 aa12.13□□□□□ -0.47
CKS1BP3-201ENST00000600888 FOXD4L1Q9NU39 408 aa12.13□□□□□ -0.47
CKS1BP3-201ENST00000600888 U3KPZ7 1027 aaPredicted RBP11.96□□□□□ -0.49
CKS1BP3-201ENST00000600888 MYCNP04198 464 aaPredicted RBP11.94□□□□□ -0.5
CKS1BP3-201ENST00000600888 RNF39Q9H2S5 420 aa11.93□□□□□ -0.5
CKS1BP3-201ENST00000600888 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.82□□□□□ -0.52
CKS1BP3-201ENST00000600888 HNRNPUL2Q1KMD3 747 aaKnown RBP11.82□□□□□ -0.52
CKS1BP3-201ENST00000600888 C1QBPQ07021 282 aaKnown RBP11.79□□□□□ -0.52
CKS1BP3-201ENST00000600888 SAMD1Q6SPF0 538 aaPredicted RBP11.78□□□□□ -0.52
CKS1BP3-201ENST00000600888 ATXN8OSP0DMR3 200 aa11.72□□□□□ -0.53
CKS1BP3-201ENST00000600888 APLP2Q06481 763 aa11.68□□□□□ -0.54
CKS1BP3-201ENST00000600888 ATF5Q9Y2D1 282 aaPredicted RBP11.64□□□□□ -0.55
CKS1BP3-201ENST00000600888 SPINK5Q9NQ38 1064 aaPredicted RBP11.62□□□□□ -0.55
CKS1BP3-201ENST00000600888 CACNB1Q02641 598 aaPredicted RBP11.58□□□□□ -0.56
CKS1BP3-201ENST00000600888 CAPN15O75808 1086 aa11.56□□□□□ -0.56
CKS1BP3-201ENST00000600888 TRHP20396 242 aaPredicted RBP11.53□□□□□ -0.56
CKS1BP3-201ENST00000600888 ZNF219Q9P2Y4 722 aaPredicted RBP11.51□□□□□ -0.57
CKS1BP3-201ENST00000600888 DSG3P32926 999 aa11.36□□□□□ -0.59
CKS1BP3-201ENST00000600888 POLA2Q14181 598 aa11.36□□□□□ -0.59
CKS1BP3-201ENST00000600888 ABCB7O75027 752 aa11.34□□□□□ -0.59
CKS1BP3-201ENST00000600888 ZBTB12Q9Y330 459 aaPredicted RBP11.15□□□□□ -0.62
CKS1BP3-201ENST00000600888 FBLN2P98095 1184 aa11.13□□□□□ -0.63
CKS1BP3-201ENST00000600888 MKRN4PQ13434 485 aaPredicted RBP11.13□□□□□ -0.63
CKS1BP3-201ENST00000600888 FKBP8Q14318 412 aa10.95□□□□□ -0.66
CKS1BP3-201ENST00000600888 OSCARQ8IYS5 282 aa10.94□□□□□ -0.66
CKS1BP3-201ENST00000600888 SPDYE4A6NLX3 237 aa10.9□□□□□ -0.66
CKS1BP3-201ENST00000600888 SPDYE2BA6NHP3 402 aa10.86□□□□□ -0.67
CKS1BP3-201ENST00000600888 SPDYE6P0CI01 402 aa10.86□□□□□ -0.67
CKS1BP3-201ENST00000600888 SPDYE2Q495Y8 402 aa10.86□□□□□ -0.67
CKS1BP3-201ENST00000600888 ZNF692Q9BU19 519 aaPredicted RBP10.84□□□□□ -0.67
CKS1BP3-201ENST00000600888 RBM42Q9BTD8 480 aaKnown RBP10.81□□□□□ -0.68
CKS1BP3-201ENST00000600888 SSUH2Q9Y2M2 353 aa10.78□□□□□ -0.68
CKS1BP3-201ENST00000600888 PROM2Q8N271 834 aa10.72□□□□□ -0.69
CKS1BP3-201ENST00000600888 AKT1S1Q96B36 256 aa10.71□□□□□ -0.69
CKS1BP3-201ENST00000600888 PABPN1Q86U42 306 aaKnown RBP eCLIP10.69□□□□□ -0.7
CKS1BP3-201ENST00000600888 REM2Q8IYK8 340 aaPredicted RBP10.61□□□□□ -0.71
CKS1BP3-201ENST00000600888 FBXO3Q9UK99 471 aa10.56□□□□□ -0.72
CKS1BP3-201ENST00000600888 SPDYE1Q8NFV5 336 aaPredicted RBP10.54□□□□□ -0.72
CKS1BP3-201ENST00000600888 STAG3Q9UJ98 1225 aa10.53□□□□□ -0.72
CKS1BP3-201ENST00000600888 CLEC11AQ9Y240 323 aa10.48□□□□□ -0.73
CKS1BP3-201ENST00000600888 PITPNM1O00562 1244 aa10.47□□□□□ -0.73
CKS1BP3-201ENST00000600888 PRR29P0C7W0 189 aa10.4□□□□□ -0.74
CKS1BP3-201ENST00000600888 VASPP50552 380 aaPredicted RBP10.4□□□□□ -0.74
CKS1BP3-201ENST00000600888 CHRDL2Q6WN34 429 aa10.35□□□□□ -0.75
CKS1BP3-201ENST00000600888 MIER1Q8N108 512 aa10.35□□□□□ -0.75
CKS1BP3-201ENST00000600888 PLCD3Q8N3E9 789 aa10.32□□□□□ -0.76
CKS1BP3-201ENST00000600888 FXR2P51116 673 aaKnown RBP eCLIP10.28□□□□□ -0.76
CKS1BP3-201ENST00000600888 IFNLR1Q8IU57 520 aaPredicted RBP10.28□□□□□ -0.76
CKS1BP3-201ENST00000600888 CREBZFQ9NS37 354 aa10.28□□□□□ -0.76
CKS1BP3-201ENST00000600888 PLEKHG5O94827 1062 aa10.27□□□□□ -0.77
CKS1BP3-201ENST00000600888 PIP4P2Q8N4L2 257 aa10.24□□□□□ -0.77
CKS1BP3-201ENST00000600888 CHADLQ6NUI6 762 aa10.23□□□□□ -0.77
CKS1BP3-201ENST00000600888 KLHL34Q8N239 644 aa10.23□□□□□ -0.77
CKS1BP3-201ENST00000600888 PRKAR2AP13861 404 aaKnown RBP10.21□□□□□ -0.77
CKS1BP3-201ENST00000600888 ZBTB47Q9UFB7 747 aaPredicted RBP10.2□□□□□ -0.78
CKS1BP3-201ENST00000600888 MNX1P50219 401 aaPredicted RBP10.19□□□□□ -0.78
CKS1BP3-201ENST00000600888 SPOCK2Q92563 424 aa10.14□□□□□ -0.79
CKS1BP3-201ENST00000600888 FARP1Q9Y4F1 1045 aaPredicted RBP10.14□□□□□ -0.79
CKS1BP3-201ENST00000600888 NPM1P06748 294 aaKnown RBP eCLIP10.11□□□□□ -0.79
CKS1BP3-201ENST00000600888 NUBP1P53384 320 aa10.07□□□□□ -0.8
CKS1BP3-201ENST00000600888 AMER1Q5JTC6 1135 aaPredicted RBP10.06□□□□□ -0.8
CKS1BP3-201ENST00000600888 RTN4Q9NQC3 1192 aaKnown RBP10.03□□□□□ -0.8
CKS1BP3-201ENST00000600888 RASEFQ8IZ41 740 aa10.01□□□□□ -0.81
CKS1BP3-201ENST00000600888 DCAF8Q5TAQ9 597 aa9.98□□□□□ -0.81
CKS1BP3-201ENST00000600888 POTEHQ6S545 545 aa9.98□□□□□ -0.81
CKS1BP3-201ENST00000600888 CIZ1Q9ULV3 898 aaPredicted RBP9.98□□□□□ -0.81
CKS1BP3-201ENST00000600888 FAM212AQ96EL1 285 aa9.97□□□□□ -0.81
CKS1BP3-201ENST00000600888 GSE1Q14687 1217 aa9.96□□□□□ -0.82
CKS1BP3-201ENST00000600888 PKD2Q13563 968 aa9.95□□□□□ -0.82
CKS1BP3-201ENST00000600888 TSPYL2Q9H2G4 693 aaPredicted RBP9.95□□□□□ -0.82
CKS1BP3-201ENST00000600888 C19orf67A6NJJ6 358 aa9.92□□□□□ -0.82
CKS1BP3-201ENST00000600888 PAK3O75914 559 aaPredicted RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms