RNA–Protein interactions for RNA: ENST00000314636.2

DHFR2-201, Transcript of dihydrofolate reductase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DHFR2, Length 3,927 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DHFR2-201ENST00000314636 NISCHQ9Y2I1 1504 aa16.78■□□□□ 0.28
DHFR2-201ENST00000314636 SHROOM4Q9ULL8 1493 aa14.37□□□□□ -0.11
DHFR2-201ENST00000314636 SUPT5HO00267 1087 aaKnown RBP14.24□□□□□ -0.13
DHFR2-201ENST00000314636 ZCCHC6Q5VYS8 1495 aaKnown RBP14.22□□□□□ -0.13
DHFR2-201ENST00000314636 CCDC180Q9P1Z9 1646 aa14.19□□□□□ -0.14
DHFR2-201ENST00000314636 CHIC1Q5VXU3 224 aa13.97□□□□□ -0.17
DHFR2-201ENST00000314636 HRCP23327 699 aa13.91□□□□□ -0.18
DHFR2-201ENST00000314636 MYO15BQ96JP2 1530 aa13.86□□□□□ -0.19
DHFR2-201ENST00000314636 DCAF8L2P0C7V8 631 aa13.84□□□□□ -0.19
DHFR2-201ENST00000314636 DCAF1Q9Y4B6 1507 aa13.82□□□□□ -0.2
DHFR2-201ENST00000314636 PCGF6Q9BYE7 350 aa13.72□□□□□ -0.21
DHFR2-201ENST00000314636 LOC105371045A0A1W2PR82 267 aa13.51□□□□□ -0.25
DHFR2-201ENST00000314636 TRIM26Q12899 539 aaPredicted RBP13.5□□□□□ -0.25
DHFR2-201ENST00000314636 PPARGC1BQ86YN6 1023 aaKnown RBP13.46□□□□□ -0.25
DHFR2-201ENST00000314636 ABCC9O60706 1549 aa13.44□□□□□ -0.26
DHFR2-201ENST00000314636 ZEB1P37275 1124 aaPredicted RBP13.39□□□□□ -0.27
DHFR2-201ENST00000314636 RSF1Q96T23 1441 aaPredicted RBP13.34□□□□□ -0.27
DHFR2-201ENST00000314636 TRIM41Q8WV44 630 aa13.32□□□□□ -0.28
DHFR2-201ENST00000314636 RB1CC1Q8TDY2 1594 aa13.26□□□□□ -0.29
DHFR2-201ENST00000314636 SCRIBQ14160 1630 aa13.26□□□□□ -0.29
DHFR2-201ENST00000314636 FAM9AQ8IZU1 332 aaPredicted RBP13.13□□□□□ -0.31
DHFR2-201ENST00000314636 NACADO15069 1562 aa13.1□□□□□ -0.31
DHFR2-201ENST00000314636 PELP1Q8IZL8 1130 aaKnown RBP13.08□□□□□ -0.32
DHFR2-201ENST00000314636 CECR2Q9BXF3 1484 aa13.01□□□□□ -0.33
DHFR2-201ENST00000314636 MROH2BQ7Z745 1585 aa13.01□□□□□ -0.33
DHFR2-201ENST00000314636 EHMT2Q96KQ7 1210 aa12.95□□□□□ -0.34
DHFR2-201ENST00000314636 WIZO95785 1651 aa12.93□□□□□ -0.34
DHFR2-201ENST00000314636 BAZ1AQ9NRL2 1556 aaPredicted RBP12.92□□□□□ -0.34
DHFR2-201ENST00000314636 CCER1Q8TC90 406 aaPredicted RBP12.88□□□□□ -0.35
DHFR2-201ENST00000314636 SCAF1Q9H7N4 1312 aaKnown RBP12.88□□□□□ -0.35
DHFR2-201ENST00000314636 EIF4G1Q04637 1599 aaKnown RBP12.84□□□□□ -0.35
DHFR2-201ENST00000314636 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.82□□□□□ -0.36
DHFR2-201ENST00000314636 WRNQ14191 1432 aaPredicted RBP eCLIP12.82□□□□□ -0.36
DHFR2-201ENST00000314636 TOP2AP11388 1531 aaKnown RBP12.8□□□□□ -0.36
DHFR2-201ENST00000314636 ACIN1Q9UKV3 1341 aaKnown RBP12.77□□□□□ -0.37
DHFR2-201ENST00000314636 EEA1Q15075 1411 aa12.77□□□□□ -0.37
DHFR2-201ENST00000314636 TNIKQ9UKE5 1360 aa12.75□□□□□ -0.37
DHFR2-201ENST00000314636 CENPBP07199 599 aaPredicted RBP12.75□□□□□ -0.37
DHFR2-201ENST00000314636 DIEXFQ68CQ4 756 aaKnown RBP12.74□□□□□ -0.37
DHFR2-201ENST00000314636 CEP162Q5TB80 1403 aa12.74□□□□□ -0.37
DHFR2-201ENST00000314636 CCDC88BA6NC98 1476 aa12.73□□□□□ -0.37
DHFR2-201ENST00000314636 SMARCA4P51532 1647 aa12.72□□□□□ -0.37
DHFR2-201ENST00000314636 ABCC8Q09428 1581 aa12.7□□□□□ -0.38
DHFR2-201ENST00000314636 SMARCA2P51531 1590 aa12.7□□□□□ -0.38
DHFR2-201ENST00000314636 CSRNP3Q8WYN3 585 aa12.69□□□□□ -0.38
DHFR2-201ENST00000314636 NEUROD1Q13562 356 aa12.67□□□□□ -0.38
DHFR2-201ENST00000314636 UBTFP17480 764 aaKnown RBP12.66□□□□□ -0.38
DHFR2-201ENST00000314636 SOGA1O94964 1423 aa12.65□□□□□ -0.38
DHFR2-201ENST00000314636 GOLGA3Q08378 1498 aa12.63□□□□□ -0.39
DHFR2-201ENST00000314636 ZNF316A6NFI3 1004 aaPredicted RBP12.62□□□□□ -0.39
DHFR2-201ENST00000314636 TTBK1Q5TCY1 1321 aaPredicted RBP12.61□□□□□ -0.39
DHFR2-201ENST00000314636 GTF3C3Q9Y5Q9 886 aa12.59□□□□□ -0.39
DHFR2-201ENST00000314636 RUSC2Q8N2Y8 1516 aa12.55□□□□□ -0.4
DHFR2-201ENST00000314636 CEP164Q9UPV0 1460 aa12.55□□□□□ -0.4
DHFR2-201ENST00000314636 MYT1Q01538 1121 aa12.54□□□□□ -0.4
DHFR2-201ENST00000314636 UNC13AQ9UPW8 1703 aa12.51□□□□□ -0.41
DHFR2-201ENST00000314636 KIF21BO75037 1637 aa12.5□□□□□ -0.41
DHFR2-201ENST00000314636 APLP2Q06481 763 aa12.5□□□□□ -0.41
DHFR2-201ENST00000314636 PEG3Q9GZU2 1588 aa12.49□□□□□ -0.41
DHFR2-201ENST00000314636 CLIP1P30622 1438 aa12.48□□□□□ -0.41
DHFR2-201ENST00000314636 BAZ1BQ9UIG0 1483 aaKnown RBP12.47□□□□□ -0.41
DHFR2-201ENST00000314636 VPS8Q8N3P4 1428 aa12.46□□□□□ -0.42
DHFR2-201ENST00000314636 HNRNPUL2Q1KMD3 747 aaKnown RBP12.45□□□□□ -0.42
DHFR2-201ENST00000314636 SYNJ1O43426 1573 aa12.41□□□□□ -0.42
DHFR2-201ENST00000314636 CLSPNQ9HAW4 1339 aa12.4□□□□□ -0.42
DHFR2-201ENST00000314636 BICRAQ9NZM4 1560 aa12.39□□□□□ -0.43
DHFR2-201ENST00000314636 PABPN1Q86U42 306 aaKnown RBP eCLIP12.39□□□□□ -0.43
DHFR2-201ENST00000314636 MIER1Q8N108 512 aa12.39□□□□□ -0.43
DHFR2-201ENST00000314636 YTHDC1Q96MU7 727 aaKnown RBP12.38□□□□□ -0.43
DHFR2-201ENST00000314636 ATAD2BQ9ULI0 1458 aa12.36□□□□□ -0.43
DHFR2-201ENST00000314636 RAPGEF2Q9Y4G8 1499 aa12.35□□□□□ -0.43
DHFR2-201ENST00000314636 TOP2BQ02880 1626 aa12.3□□□□□ -0.44
DHFR2-201ENST00000314636 ERICH3Q5RHP9 1530 aa12.29□□□□□ -0.44
DHFR2-201ENST00000314636 RANGAP1P46060 587 aaPredicted RBP12.26□□□□□ -0.45
DHFR2-201ENST00000314636 DHX57Q6P158 1386 aaKnown RBP12.25□□□□□ -0.45
DHFR2-201ENST00000314636 PRXQ9BXM0 1461 aa12.25□□□□□ -0.45
DHFR2-201ENST00000314636 BIVM-ERCC5R4GMW8 1640 aa12.24□□□□□ -0.45
DHFR2-201ENST00000314636 ARAP1Q96P48 1450 aa12.21□□□□□ -0.46
DHFR2-201ENST00000314636 RRBP1Q9P2E9 1410 aaKnown RBP12.2□□□□□ -0.46
DHFR2-201ENST00000314636 KIF27Q86VH2 1401 aa12.18□□□□□ -0.46
DHFR2-201ENST00000314636 CUX2O14529 1486 aa12.17□□□□□ -0.46
DHFR2-201ENST00000314636 KANK4Q5T7N3 995 aaPredicted RBP12.17□□□□□ -0.46
DHFR2-201ENST00000314636 CCNB3Q8WWL7 1395 aa12.14□□□□□ -0.47
DHFR2-201ENST00000314636 NCAPD3P42695 1498 aa12.12□□□□□ -0.47
DHFR2-201ENST00000314636 HMGXB3Q12766 1538 aa12.12□□□□□ -0.47
DHFR2-201ENST00000314636 CUX1P39880 1505 aa12.1□□□□□ -0.47
DHFR2-201ENST00000314636 SUPT16HQ9Y5B9 1047 aaKnown RBP12.09□□□□□ -0.47
DHFR2-201ENST00000314636 ARHGAP35Q9NRY4 1499 aa12.08□□□□□ -0.48
DHFR2-201ENST00000314636 MAP3K1Q13233 1512 aa12.07□□□□□ -0.48
DHFR2-201ENST00000314636 CFTRP13569 1480 aa12.06□□□□□ -0.48
DHFR2-201ENST00000314636 RAB3GAP2Q9H2M9 1393 aa12.03□□□□□ -0.48
DHFR2-201ENST00000314636 ITGAEP38570 1179 aa12.03□□□□□ -0.48
DHFR2-201ENST00000314636 TIMELESSQ9UNS1 1208 aa12.02□□□□□ -0.49
DHFR2-201ENST00000314636 SETD5Q9C0A6 1442 aa12.02□□□□□ -0.49
DHFR2-201ENST00000314636 TIAM1Q13009 1591 aa12□□□□□ -0.49
DHFR2-201ENST00000314636 IGF1RP08069 1367 aa11.99□□□□□ -0.49
DHFR2-201ENST00000314636 FHAD1B1AJZ9 1412 aa11.98□□□□□ -0.49
DHFR2-201ENST00000314636 MAPKBP1O60336 1514 aa11.97□□□□□ -0.49
DHFR2-201ENST00000314636 LRRC9Q6ZRR7 1453 aa11.97□□□□□ -0.49
DHFR2-201ENST00000314636 CARMIL1Q5VZK9 1371 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms