RNA–Protein interactions for RNA: ENST00000229307.8

NANOG-201, Transcript of Nanog homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NANOG, Length 5,183 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NANOG-201ENST00000229307 NISCHQ9Y2I1 1504 aa15.57■□□□□ 0.08
NANOG-201ENST00000229307 DCAF8L2P0C7V8 631 aa14.61□□□□□ -0.07
NANOG-201ENST00000229307 ABCC9O60706 1549 aa13.9□□□□□ -0.18
NANOG-201ENST00000229307 CCDC180Q9P1Z9 1646 aa13.8□□□□□ -0.2
NANOG-201ENST00000229307 SHROOM4Q9ULL8 1493 aa13.45□□□□□ -0.26
NANOG-201ENST00000229307 SUPT5HO00267 1087 aaKnown RBP13.41□□□□□ -0.26
NANOG-201ENST00000229307 RB1CC1Q8TDY2 1594 aa13.32□□□□□ -0.28
NANOG-201ENST00000229307 NACADO15069 1562 aa13.2□□□□□ -0.3
NANOG-201ENST00000229307 PABPN1Q86U42 306 aaKnown RBP eCLIP13.1□□□□□ -0.31
NANOG-201ENST00000229307 FAM9AQ8IZU1 332 aaPredicted RBP13.04□□□□□ -0.32
NANOG-201ENST00000229307 MYO15BQ96JP2 1530 aa12.92□□□□□ -0.34
NANOG-201ENST00000229307 ZCCHC6Q5VYS8 1495 aaKnown RBP12.88□□□□□ -0.35
NANOG-201ENST00000229307 DCAF1Q9Y4B6 1507 aa12.82□□□□□ -0.36
NANOG-201ENST00000229307 APLP2Q06481 763 aa12.76□□□□□ -0.37
NANOG-201ENST00000229307 SCRIBQ14160 1630 aa12.74□□□□□ -0.37
NANOG-201ENST00000229307 EHMT2Q96KQ7 1210 aa12.67□□□□□ -0.38
NANOG-201ENST00000229307 TRIM41Q8WV44 630 aa12.62□□□□□ -0.39
NANOG-201ENST00000229307 CECR2Q9BXF3 1484 aa12.54□□□□□ -0.4
NANOG-201ENST00000229307 DNAJC5BQ9UF47 199 aa12.51□□□□□ -0.41
NANOG-201ENST00000229307 UBTFP17480 764 aaKnown RBP12.42□□□□□ -0.42
NANOG-201ENST00000229307 ATP1B4Q9UN42 357 aaPredicted RBP12.41□□□□□ -0.42
NANOG-201ENST00000229307 RANGAP1P46060 587 aaPredicted RBP12.4□□□□□ -0.42
NANOG-201ENST00000229307 BICRAQ9NZM4 1560 aa12.39□□□□□ -0.43
NANOG-201ENST00000229307 EIF4G1Q04637 1599 aaKnown RBP12.37□□□□□ -0.43
NANOG-201ENST00000229307 CC2D2AQ9P2K1 1620 aa12.33□□□□□ -0.44
NANOG-201ENST00000229307 ERCC6Q03468 1493 aa12.32□□□□□ -0.44
NANOG-201ENST00000229307 UNC13AQ9UPW8 1703 aa12.31□□□□□ -0.44
NANOG-201ENST00000229307 SMARCA2P51531 1590 aa12.26□□□□□ -0.45
NANOG-201ENST00000229307 BAZ1BQ9UIG0 1483 aaKnown RBP12.24□□□□□ -0.45
NANOG-201ENST00000229307 BAZ1AQ9NRL2 1556 aaPredicted RBP12.23□□□□□ -0.45
NANOG-201ENST00000229307 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.19□□□□□ -0.46
NANOG-201ENST00000229307 HNRNPUL2Q1KMD3 747 aaKnown RBP12.19□□□□□ -0.46
NANOG-201ENST00000229307 TTBK1Q5TCY1 1321 aaPredicted RBP12.16□□□□□ -0.46
NANOG-201ENST00000229307 NCAPD3P42695 1498 aa12.14□□□□□ -0.47
NANOG-201ENST00000229307 MYT1LQ9UL68 1186 aa12.12□□□□□ -0.47
NANOG-201ENST00000229307 PDS5BQ9NTI5 1447 aa12.11□□□□□ -0.47
NANOG-201ENST00000229307 ATAD2BQ9ULI0 1458 aa12.11□□□□□ -0.47
NANOG-201ENST00000229307 FBLN2P98095 1184 aa12.06□□□□□ -0.48
NANOG-201ENST00000229307 SMARCA4P51532 1647 aa12.05□□□□□ -0.48
NANOG-201ENST00000229307 HMGXB3Q12766 1538 aa12.02□□□□□ -0.49
NANOG-201ENST00000229307 CHIC1Q5VXU3 224 aa11.97□□□□□ -0.49
NANOG-201ENST00000229307 CADPSQ9ULU8 1353 aa11.95□□□□□ -0.5
NANOG-201ENST00000229307 CUX2O14529 1486 aa11.92□□□□□ -0.5
NANOG-201ENST00000229307 MROH2BQ7Z745 1585 aa11.91□□□□□ -0.5
NANOG-201ENST00000229307 PCGF6Q9BYE7 350 aa11.89□□□□□ -0.51
NANOG-201ENST00000229307 CEP164Q9UPV0 1460 aa11.86□□□□□ -0.51
NANOG-201ENST00000229307 RSF1Q96T23 1441 aaPredicted RBP11.86□□□□□ -0.51
NANOG-201ENST00000229307 LAMC3Q9Y6N6 1575 aa11.86□□□□□ -0.51
NANOG-201ENST00000229307 CCER1Q8TC90 406 aaPredicted RBP11.85□□□□□ -0.51
NANOG-201ENST00000229307 ZEB1P37275 1124 aaPredicted RBP11.85□□□□□ -0.51
NANOG-201ENST00000229307 NPM1P06748 294 aaKnown RBP eCLIP11.82□□□□□ -0.52
NANOG-201ENST00000229307 MRC2Q9UBG0 1479 aa11.8□□□□□ -0.52
NANOG-201ENST00000229307 TOP2AP11388 1531 aaKnown RBP11.79□□□□□ -0.52
NANOG-201ENST00000229307 PEG3Q9GZU2 1588 aa11.78□□□□□ -0.52
NANOG-201ENST00000229307 ITGAEP38570 1179 aa11.78□□□□□ -0.52
NANOG-201ENST00000229307 CSRNP3Q8WYN3 585 aa11.78□□□□□ -0.52
NANOG-201ENST00000229307 CDK11AQ9UQ88 783 aaPredicted RBP11.78□□□□□ -0.52
NANOG-201ENST00000229307 FANCD2Q9BXW9 1451 aa11.77□□□□□ -0.52
NANOG-201ENST00000229307 NESP48681 1621 aa11.77□□□□□ -0.53
NANOG-201ENST00000229307 PELP1Q8IZL8 1130 aaKnown RBP11.76□□□□□ -0.53
NANOG-201ENST00000229307 CHMP7Q8WUX9 453 aaPredicted RBP11.75□□□□□ -0.53
NANOG-201ENST00000229307 ABCC8Q09428 1581 aa11.75□□□□□ -0.53
NANOG-201ENST00000229307 OSCARQ8IYS5 282 aa11.74□□□□□ -0.53
NANOG-201ENST00000229307 LOC105371045A0A1W2PR82 267 aa11.73□□□□□ -0.53
NANOG-201ENST00000229307 WIZO95785 1651 aa11.73□□□□□ -0.53
NANOG-201ENST00000229307 PPARGC1BQ86YN6 1023 aaKnown RBP11.73□□□□□ -0.53
NANOG-201ENST00000229307 DNAJC5Q9H3Z4 198 aa11.72□□□□□ -0.53
NANOG-201ENST00000229307 FAM50AQ14320 339 aaKnown RBP11.69□□□□□ -0.54
NANOG-201ENST00000229307 TRIM26Q12899 539 aaPredicted RBP11.69□□□□□ -0.54
NANOG-201ENST00000229307 CFTRP13569 1480 aa11.66□□□□□ -0.54
NANOG-201ENST00000229307 P3H3Q8IVL6 736 aa11.65□□□□□ -0.54
NANOG-201ENST00000229307 CCDC88BA6NC98 1476 aa11.64□□□□□ -0.55
NANOG-201ENST00000229307 ESF1Q9H501 851 aaKnown RBP11.62□□□□□ -0.55
NANOG-201ENST00000229307 IFT140Q96RY7 1462 aa11.6□□□□□ -0.55
NANOG-201ENST00000229307 TRIM52Q96A61 297 aa11.6□□□□□ -0.55
NANOG-201ENST00000229307 MYT1Q01538 1121 aa11.6□□□□□ -0.55
NANOG-201ENST00000229307 ARID3CA6NKF2 412 aa11.57□□□□□ -0.56
NANOG-201ENST00000229307 WRNQ14191 1432 aaPredicted RBP eCLIP11.57□□□□□ -0.56
NANOG-201ENST00000229307 EEA1Q15075 1411 aa11.55□□□□□ -0.56
NANOG-201ENST00000229307 SOGA1O94964 1423 aa11.55□□□□□ -0.56
NANOG-201ENST00000229307 KIF27Q86VH2 1401 aa11.54□□□□□ -0.56
NANOG-201ENST00000229307 ZNF777Q9ULD5 760 aaPredicted RBP11.54□□□□□ -0.56
NANOG-201ENST00000229307 TRHP20396 242 aaPredicted RBP11.53□□□□□ -0.56
NANOG-201ENST00000229307 WDR62O43379 1518 aa11.51□□□□□ -0.57
NANOG-201ENST00000229307 KIF21AQ7Z4S6 1674 aa11.48□□□□□ -0.57
NANOG-201ENST00000229307 POLR3GLQ9BT43 218 aa11.48□□□□□ -0.57
NANOG-201ENST00000229307 TOPBP1Q92547 1522 aa11.46□□□□□ -0.58
NANOG-201ENST00000229307 BCANQ96GW7 911 aa11.46□□□□□ -0.58
NANOG-201ENST00000229307 SLC4A1APQ9BWU0 796 aaKnown RBP11.45□□□□□ -0.58
NANOG-201ENST00000229307 DNMBPQ6XZF7 1577 aa11.45□□□□□ -0.58
NANOG-201ENST00000229307 TDRD9Q8NDG6 1382 aaKnown RBP11.45□□□□□ -0.58
NANOG-201ENST00000229307 THOC2Q8NI27 1593 aaKnown RBP11.44□□□□□ -0.58
NANOG-201ENST00000229307 CYB5RLQ6IPT4 315 aa11.43□□□□□ -0.58
NANOG-201ENST00000229307 PLEKHD1A6NEE1 506 aa11.42□□□□□ -0.58
NANOG-201ENST00000229307 URB2Q14146 1524 aaKnown RBP11.41□□□□□ -0.58
NANOG-201ENST00000229307 GOLGA3Q08378 1498 aa11.4□□□□□ -0.58
NANOG-201ENST00000229307 STAG3Q9UJ98 1225 aa11.4□□□□□ -0.58
NANOG-201ENST00000229307 MTUS2Q5JR59 1369 aa11.4□□□□□ -0.59
NANOG-201ENST00000229307 TSPY4P0CV99 314 aa11.39□□□□□ -0.59
NANOG-201ENST00000229307 TSPY10P0CW01 314 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms