Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.46■□□□□ 0.71
MKS1Q9NXB0 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 MIR638-201ENST00000385237 100 ntBASIC19.45■□□□□ 0.7
MKS1Q9NXB0 KRT18P11-201ENST00000435214 1283 ntBASIC19.45■□□□□ 0.7
MKS1Q9NXB0 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 CYP2T3P-201ENST00000601990 817 ntBASIC19.45■□□□□ 0.7
MKS1Q9NXB0 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MKS1Q9NXB0 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MKS1Q9NXB0 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
MKS1Q9NXB0 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.42■□□□□ 0.7
MKS1Q9NXB0 AC068338.2-201ENST00000563278 1430 ntBASIC19.42■□□□□ 0.7
MKS1Q9NXB0 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MKS1Q9NXB0 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MKS1Q9NXB0 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
MKS1Q9NXB0 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MKS1Q9NXB0 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
MKS1Q9NXB0 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms