Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.88■□□□□ 0.77
TNFRSF4P43489 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TNFRSF4P43489 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.88■□□□□ 0.77
TNFRSF4P43489 AC004951.3-201ENST00000418645 1148 ntBASIC19.88■□□□□ 0.77
TNFRSF4P43489 LIN28AP1-201ENST00000429574 405 ntBASIC19.88■□□□□ 0.77
TNFRSF4P43489 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
TNFRSF4P43489 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.88■□□□□ 0.77
TNFRSF4P43489 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.88■□□□□ 0.77
TNFRSF4P43489 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.88■□□□□ 0.77
TNFRSF4P43489 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.88■□□□□ 0.77
TNFRSF4P43489 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.88■□□□□ 0.77
TNFRSF4P43489 SLC25A1P4-201ENST00000567977 778 ntBASIC19.88■□□□□ 0.77
TNFRSF4P43489 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TNFRSF4P43489 AC011298.2-201ENST00000617989 482 ntBASIC19.88■□□□□ 0.77
TNFRSF4P43489 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.88■□□□□ 0.77
TNFRSF4P43489 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TNFRSF4P43489 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TNFRSF4P43489 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TNFRSF4P43489 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.88■□□□□ 0.77
TNFRSF4P43489 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.88■□□□□ 0.77
TNFRSF4P43489 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
TNFRSF4P43489 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
TNFRSF4P43489 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TNFRSF4P43489 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TNFRSF4P43489 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TNFRSF4P43489 BX119927.1-201ENST00000636596 1552 ntBASIC19.87■□□□□ 0.77
TNFRSF4P43489 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TNFRSF4P43489 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TNFRSF4P43489 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
TNFRSF4P43489 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.87■□□□□ 0.77
TNFRSF4P43489 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.87■□□□□ 0.77
TNFRSF4P43489 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
TNFRSF4P43489 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
TNFRSF4P43489 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.87■□□□□ 0.77
TNFRSF4P43489 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
TNFRSF4P43489 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.87■□□□□ 0.77
TNFRSF4P43489 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.87■□□□□ 0.77
TNFRSF4P43489 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.87■□□□□ 0.77
TNFRSF4P43489 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
TNFRSF4P43489 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.87■□□□□ 0.77
TNFRSF4P43489 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TNFRSF4P43489 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TNFRSF4P43489 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
TNFRSF4P43489 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
TNFRSF4P43489 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TNFRSF4P43489 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
TNFRSF4P43489 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TNFRSF4P43489 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TNFRSF4P43489 KRT8P8-201ENST00000434750 1448 ntBASIC19.86■□□□□ 0.77
TNFRSF4P43489 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TNFRSF4P43489 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
TNFRSF4P43489 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.86■□□□□ 0.77
TNFRSF4P43489 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
TNFRSF4P43489 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
TNFRSF4P43489 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TNFRSF4P43489 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.86■□□□□ 0.77
TNFRSF4P43489 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.86■□□□□ 0.77
TNFRSF4P43489 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.86■□□□□ 0.77
TNFRSF4P43489 ECEL1P2-202ENST00000465689 757 ntBASIC19.86■□□□□ 0.77
TNFRSF4P43489 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.86■□□□□ 0.77
TNFRSF4P43489 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.86■□□□□ 0.77
TNFRSF4P43489 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.86■□□□□ 0.77
TNFRSF4P43489 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.86■□□□□ 0.77
TNFRSF4P43489 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.86■□□□□ 0.77
TNFRSF4P43489 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.86■□□□□ 0.77
TNFRSF4P43489 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TNFRSF4P43489 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TNFRSF4P43489 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
TNFRSF4P43489 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TNFRSF4P43489 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFRSF4P43489 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFRSF4P43489 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
TNFRSF4P43489 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TNFRSF4P43489 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFRSF4P43489 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.85■□□□□ 0.77
TNFRSF4P43489 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TNFRSF4P43489 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFRSF4P43489 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFRSF4P43489 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.85■□□□□ 0.77
TNFRSF4P43489 ATP5G1P1-201ENST00000448724 379 ntBASIC19.85■□□□□ 0.77
TNFRSF4P43489 AC104076.2-201ENST00000448912 469 ntBASIC19.85■□□□□ 0.77
TNFRSF4P43489 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
TNFRSF4P43489 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFRSF4P43489 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFRSF4P43489 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFRSF4P43489 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFRSF4P43489 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFRSF4P43489 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
TNFRSF4P43489 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFRSF4P43489 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFRSF4P43489 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.84■□□□□ 0.77
TNFRSF4P43489 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TNFRSF4P43489 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
TNFRSF4P43489 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TNFRSF4P43489 AP001271.2-201ENST00000624018 1556 ntBASIC19.84■□□□□ 0.77
TNFRSF4P43489 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.84■□□□□ 0.77
TNFRSF4P43489 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.84■□□□□ 0.77
TNFRSF4P43489 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TNFRSF4P43489 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.84■□□□□ 0.77
TNFRSF4P43489 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms