Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DQA1P01909 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 AC090164.3-201ENST00000610780 2143 ntBASIC14.81□□□□□ -0.04
HLA-DQA1P01909 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 AC131281.2-201ENST00000520478 145 ntBASIC14.81□□□□□ -0.04
HLA-DQA1P01909 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC14.81□□□□□ -0.04
HLA-DQA1P01909 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 AC099791.2-201ENST00000605725 427 ntBASIC14.8□□□□□ -0.04
HLA-DQA1P01909 AC092171.4-201ENST00000609130 632 ntBASIC14.8□□□□□ -0.04
HLA-DQA1P01909 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 RASSF1-AS1-201ENST00000629828 790 ntBASIC14.8□□□□□ -0.04
HLA-DQA1P01909 MIR2861-201ENST00000636310 90 ntBASIC14.8□□□□□ -0.04
HLA-DQA1P01909 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms