Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SNX3O60493 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SNX3O60493 AP001271.2-201ENST00000624018 1556 ntBASIC19.42■□□□□ 0.7
SNX3O60493 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SNX3O60493 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.42■□□□□ 0.7
SNX3O60493 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.42■□□□□ 0.7
SNX3O60493 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SNX3O60493 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SNX3O60493 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SNX3O60493 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SNX3O60493 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.42■□□□□ 0.7
SNX3O60493 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SNX3O60493 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SNX3O60493 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SNX3O60493 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SNX3O60493 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SNX3O60493 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SNX3O60493 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SNX3O60493 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.41■□□□□ 0.7
SNX3O60493 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SNX3O60493 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.41■□□□□ 0.7
SNX3O60493 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SNX3O60493 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SNX3O60493 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SNX3O60493 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.4■□□□□ 0.7
SNX3O60493 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.4■□□□□ 0.7
SNX3O60493 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.4■□□□□ 0.7
SNX3O60493 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SNX3O60493 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SNX3O60493 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.4■□□□□ 0.7
SNX3O60493 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.4■□□□□ 0.7
SNX3O60493 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SNX3O60493 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SNX3O60493 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SNX3O60493 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SNX3O60493 AC138907.5-202ENST00000569484 235 ntBASIC19.4■□□□□ 0.7
SNX3O60493 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.4■□□□□ 0.7
SNX3O60493 MIR4466-201ENST00000606121 54 ntBASIC19.4■□□□□ 0.7
SNX3O60493 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SNX3O60493 AC120498.10-201ENST00000621827 505 ntBASIC19.4■□□□□ 0.7
SNX3O60493 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.4■□□□□ 0.7
SNX3O60493 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SNX3O60493 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SNX3O60493 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SNX3O60493 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SNX3O60493 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SNX3O60493 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SNX3O60493 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SNX3O60493 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
SNX3O60493 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SNX3O60493 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SNX3O60493 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.39■□□□□ 0.7
SNX3O60493 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SNX3O60493 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SNX3O60493 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
SNX3O60493 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SNX3O60493 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.39■□□□□ 0.69
SNX3O60493 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SNX3O60493 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.39■□□□□ 0.69
SNX3O60493 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.39■□□□□ 0.69
SNX3O60493 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SNX3O60493 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
SNX3O60493 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SNX3O60493 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SNX3O60493 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SNX3O60493 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SNX3O60493 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.39■□□□□ 0.69
SNX3O60493 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SNX3O60493 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SNX3O60493 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.39■□□□□ 0.69
SNX3O60493 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.39■□□□□ 0.69
SNX3O60493 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.39■□□□□ 0.69
SNX3O60493 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SNX3O60493 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.38■□□□□ 0.69
SNX3O60493 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SNX3O60493 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.38■□□□□ 0.69
SNX3O60493 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
SNX3O60493 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SNX3O60493 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.38■□□□□ 0.69
SNX3O60493 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SNX3O60493 AC007322.3-201ENST00000426526 701 ntBASIC19.38■□□□□ 0.69
SNX3O60493 RARRES2P1-201ENST00000474487 481 ntBASIC19.38■□□□□ 0.69
SNX3O60493 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SNX3O60493 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms