Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
AP4E1Q9UPM8 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
AP4E1Q9UPM8 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 UNC93B5-201ENST00000530315 699 ntBASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 AC008687.6-201ENST00000596318 630 ntBASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 AC120498.8-201ENST00000614275 531 ntBASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 AL158211.5-201ENST00000623583 2518 ntBASIC20.49■□□□□ 0.87
AP4E1Q9UPM8 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 UNC93B4-201ENST00000505679 747 ntBASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 KRT18P6-201ENST00000555540 1265 ntBASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
AP4E1Q9UPM8 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 TFP1-202ENST00000475455 1573 ntBASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms