Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TTC28Q96AY4 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
TTC28Q96AY4 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
TTC28Q96AY4 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.22■□□□□ 0.83
TTC28Q96AY4 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.22■□□□□ 0.83
TTC28Q96AY4 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TTC28Q96AY4 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TTC28Q96AY4 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.22■□□□□ 0.83
TTC28Q96AY4 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.22■□□□□ 0.83
TTC28Q96AY4 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TTC28Q96AY4 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TTC28Q96AY4 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TTC28Q96AY4 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
TTC28Q96AY4 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
TTC28Q96AY4 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TTC28Q96AY4 HNRNPA1P28-201ENST00000424481 961 ntBASIC20.21■□□□□ 0.83
TTC28Q96AY4 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TTC28Q96AY4 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.21■□□□□ 0.83
TTC28Q96AY4 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TTC28Q96AY4 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.21■□□□□ 0.83
TTC28Q96AY4 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TTC28Q96AY4 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TTC28Q96AY4 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.21■□□□□ 0.83
TTC28Q96AY4 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TTC28Q96AY4 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TTC28Q96AY4 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TTC28Q96AY4 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TTC28Q96AY4 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.21■□□□□ 0.83
TTC28Q96AY4 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.21■□□□□ 0.83
TTC28Q96AY4 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.21■□□□□ 0.83
TTC28Q96AY4 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TTC28Q96AY4 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TTC28Q96AY4 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
TTC28Q96AY4 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
TTC28Q96AY4 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.21■□□□□ 0.83
TTC28Q96AY4 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
TTC28Q96AY4 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TTC28Q96AY4 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
TTC28Q96AY4 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
TTC28Q96AY4 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.21■□□□□ 0.83
TTC28Q96AY4 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.83
TTC28Q96AY4 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TTC28Q96AY4 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.2■□□□□ 0.82
TTC28Q96AY4 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.2■□□□□ 0.82
TTC28Q96AY4 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TTC28Q96AY4 TPSP2-201ENST00000561760 610 ntBASIC20.2■□□□□ 0.82
TTC28Q96AY4 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.2■□□□□ 0.82
TTC28Q96AY4 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TTC28Q96AY4 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TTC28Q96AY4 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.2■□□□□ 0.82
TTC28Q96AY4 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TTC28Q96AY4 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.2■□□□□ 0.82
TTC28Q96AY4 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TTC28Q96AY4 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.2■□□□□ 0.82
TTC28Q96AY4 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TTC28Q96AY4 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.2■□□□□ 0.82
TTC28Q96AY4 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TTC28Q96AY4 Z85996.1-201ENST00000494644 937 ntBASIC20.2■□□□□ 0.82
TTC28Q96AY4 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.2■□□□□ 0.82
TTC28Q96AY4 GCSHP2-201ENST00000560971 527 ntBASIC20.2■□□□□ 0.82
TTC28Q96AY4 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.2■□□□□ 0.82
TTC28Q96AY4 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.2■□□□□ 0.82
TTC28Q96AY4 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
TTC28Q96AY4 AC055717.3-201ENST00000622967 595 ntBASIC20.2■□□□□ 0.82
TTC28Q96AY4 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TTC28Q96AY4 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TTC28Q96AY4 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.19■□□□□ 0.82
TTC28Q96AY4 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
TTC28Q96AY4 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TTC28Q96AY4 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TTC28Q96AY4 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TTC28Q96AY4 CHCHD2P8-201ENST00000429873 447 ntBASIC20.19■□□□□ 0.82
TTC28Q96AY4 TSSC2-201ENST00000450217 709 ntBASIC20.19■□□□□ 0.82
TTC28Q96AY4 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.19■□□□□ 0.82
TTC28Q96AY4 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC20.19■□□□□ 0.82
TTC28Q96AY4 AC012615.1-201ENST00000565797 1299 ntBASIC20.19■□□□□ 0.82
TTC28Q96AY4 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
TTC28Q96AY4 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
TTC28Q96AY4 AC131212.4-201ENST00000623606 975 ntBASIC20.19■□□□□ 0.82
TTC28Q96AY4 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.19■□□□□ 0.82
TTC28Q96AY4 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TTC28Q96AY4 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TTC28Q96AY4 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TTC28Q96AY4 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TTC28Q96AY4 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
TTC28Q96AY4 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC20.18■□□□□ 0.82
TTC28Q96AY4 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.18■□□□□ 0.82
TTC28Q96AY4 HLA-J-202ENST00000469281 1241 ntBASIC20.18■□□□□ 0.82
TTC28Q96AY4 PPIE-208ENST00000470213 927 ntTSL 3 BASIC20.18■□□□□ 0.82
TTC28Q96AY4 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TTC28Q96AY4 AL691403.2-201ENST00000618460 490 ntBASIC20.18■□□□□ 0.82
TTC28Q96AY4 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
TTC28Q96AY4 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TTC28Q96AY4 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TTC28Q96AY4 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TTC28Q96AY4 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TTC28Q96AY4 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.18■□□□□ 0.82
TTC28Q96AY4 AP006587.1-201ENST00000534129 1502 ntBASIC20.18■□□□□ 0.82
TTC28Q96AY4 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TTC28Q96AY4 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms