Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC116Q8IYX3 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 AP001271.2-201ENST00000624018 1556 ntBASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 AC060766.5-201ENST00000590539 871 ntBASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC116Q8IYX3 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 PNMA6B-201ENST00000538162 1200 ntBASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC116Q8IYX3 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC116Q8IYX3 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC116Q8IYX3 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC116Q8IYX3 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC116Q8IYX3 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms