Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS13CQ709C8 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13CQ709C8 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13CQ709C8 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS13CQ709C8 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13CQ709C8 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
VPS13CQ709C8 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS13CQ709C8 AC011558.1-201ENST00000623459 338 ntBASIC16.55■□□□□ 0.24
VPS13CQ709C8 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13CQ709C8 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS13CQ709C8 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13CQ709C8 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13CQ709C8 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13CQ709C8 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.54■□□□□ 0.24
VPS13CQ709C8 LINC01465-201ENST00000408887 1940 ntBASIC16.54■□□□□ 0.24
VPS13CQ709C8 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS13CQ709C8 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13CQ709C8 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13CQ709C8 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13CQ709C8 AP000347.1-202ENST00000435868 847 ntBASIC16.54■□□□□ 0.24
VPS13CQ709C8 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS13CQ709C8 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS13CQ709C8 AL671883.3-201ENST00000603274 991 ntBASIC16.54■□□□□ 0.24
VPS13CQ709C8 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS13CQ709C8 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13CQ709C8 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13CQ709C8 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VPS13CQ709C8 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13CQ709C8 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13CQ709C8 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS13CQ709C8 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS13CQ709C8 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS13CQ709C8 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS13CQ709C8 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC16.54■□□□□ 0.24
VPS13CQ709C8 AC096733.2-201ENST00000609937 1394 ntBASIC16.54■□□□□ 0.24
VPS13CQ709C8 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13CQ709C8 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13CQ709C8 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS13CQ709C8 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13CQ709C8 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.53■□□□□ 0.24
VPS13CQ709C8 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS13CQ709C8 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.53■□□□□ 0.24
VPS13CQ709C8 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
VPS13CQ709C8 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13CQ709C8 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13CQ709C8 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS13CQ709C8 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.53■□□□□ 0.24
VPS13CQ709C8 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.53■□□□□ 0.24
VPS13CQ709C8 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS13CQ709C8 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13CQ709C8 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13CQ709C8 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
VPS13CQ709C8 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13CQ709C8 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13CQ709C8 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
VPS13CQ709C8 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13CQ709C8 KRT8P10-201ENST00000450021 1447 ntBASIC16.53■□□□□ 0.24
VPS13CQ709C8 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13CQ709C8 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13CQ709C8 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13CQ709C8 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.53■□□□□ 0.24
VPS13CQ709C8 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13CQ709C8 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13CQ709C8 LSR-203ENST00000360798 1963 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS13CQ709C8 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
VPS13CQ709C8 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC16.52■□□□□ 0.24
VPS13CQ709C8 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VPS13CQ709C8 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.52■□□□□ 0.24
VPS13CQ709C8 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VPS13CQ709C8 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VPS13CQ709C8 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
VPS13CQ709C8 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VPS13CQ709C8 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC16.52■□□□□ 0.24
VPS13CQ709C8 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.52■□□□□ 0.24
VPS13CQ709C8 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS13CQ709C8 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC16.52■□□□□ 0.24
VPS13CQ709C8 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS13CQ709C8 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS13CQ709C8 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS13CQ709C8 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS13CQ709C8 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS13CQ709C8 AC008040.2-201ENST00000461049 708 ntBASIC16.52■□□□□ 0.24
VPS13CQ709C8 AP002982.1-201ENST00000492365 877 ntBASIC16.52■□□□□ 0.24
VPS13CQ709C8 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VPS13CQ709C8 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC16.52■□□□□ 0.23
VPS13CQ709C8 PVRIG2P-201ENST00000435460 978 ntBASIC16.52■□□□□ 0.23
VPS13CQ709C8 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.52■□□□□ 0.23
VPS13CQ709C8 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.52■□□□□ 0.23
VPS13CQ709C8 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS13CQ709C8 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
VPS13CQ709C8 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13CQ709C8 EGLN1P1-201ENST00000531623 762 ntBASIC16.51■□□□□ 0.23
VPS13CQ709C8 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS13CQ709C8 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13CQ709C8 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13CQ709C8 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC16.51■□□□□ 0.23
VPS13CQ709C8 AC083849.1-201ENST00000615227 514 ntBASIC16.51■□□□□ 0.23
VPS13CQ709C8 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS13CQ709C8 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13CQ709C8 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms