Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
LIM2P55344 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIM2P55344 PHGDH-210ENST00000641115 1638 ntBASIC18.77■□□□□ 0.6
LIM2P55344 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.59
LIM2P55344 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
LIM2P55344 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIM2P55344 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.76■□□□□ 0.59
LIM2P55344 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIM2P55344 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIM2P55344 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIM2P55344 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIM2P55344 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIM2P55344 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIM2P55344 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.76■□□□□ 0.59
LIM2P55344 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
LIM2P55344 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.76■□□□□ 0.59
LIM2P55344 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIM2P55344 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.76■□□□□ 0.59
LIM2P55344 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
LIM2P55344 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
LIM2P55344 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.76■□□□□ 0.59
LIM2P55344 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
LIM2P55344 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIM2P55344 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIM2P55344 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
LIM2P55344 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIM2P55344 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.75■□□□□ 0.59
LIM2P55344 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
LIM2P55344 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIM2P55344 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIM2P55344 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.75■□□□□ 0.59
LIM2P55344 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIM2P55344 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIM2P55344 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIM2P55344 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIM2P55344 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIM2P55344 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIM2P55344 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIM2P55344 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIM2P55344 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.75■□□□□ 0.59
LIM2P55344 ESRRAP1-201ENST00000400596 1257 ntBASIC18.75■□□□□ 0.59
LIM2P55344 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.75■□□□□ 0.59
LIM2P55344 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.75■□□□□ 0.59
LIM2P55344 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.75■□□□□ 0.59
LIM2P55344 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIM2P55344 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.75■□□□□ 0.59
LIM2P55344 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIM2P55344 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.75■□□□□ 0.59
LIM2P55344 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIM2P55344 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
LIM2P55344 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.75■□□□□ 0.59
LIM2P55344 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
LIM2P55344 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIM2P55344 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.74■□□□□ 0.59
LIM2P55344 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIM2P55344 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
LIM2P55344 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIM2P55344 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIM2P55344 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIM2P55344 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIM2P55344 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
LIM2P55344 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.74■□□□□ 0.59
LIM2P55344 POM121L13P-201ENST00000422362 380 ntBASIC18.74■□□□□ 0.59
LIM2P55344 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.74■□□□□ 0.59
LIM2P55344 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.74■□□□□ 0.59
LIM2P55344 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIM2P55344 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIM2P55344 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIM2P55344 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIM2P55344 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.73■□□□□ 0.59
LIM2P55344 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIM2P55344 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIM2P55344 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIM2P55344 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.73■□□□□ 0.59
LIM2P55344 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIM2P55344 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.73■□□□□ 0.59
LIM2P55344 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.73■□□□□ 0.59
LIM2P55344 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.73■□□□□ 0.59
LIM2P55344 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIM2P55344 AC125437.2-201ENST00000625180 2167 ntBASIC18.73■□□□□ 0.59
LIM2P55344 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.73■□□□□ 0.59
LIM2P55344 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIM2P55344 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIM2P55344 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.73■□□□□ 0.59
LIM2P55344 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIM2P55344 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.73■□□□□ 0.59
LIM2P55344 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIM2P55344 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIM2P55344 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.72■□□□□ 0.59
LIM2P55344 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIM2P55344 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.72■□□□□ 0.59
LIM2P55344 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.72■□□□□ 0.59
LIM2P55344 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
LIM2P55344 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIM2P55344 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIM2P55344 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIM2P55344 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIM2P55344 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.72■□□□□ 0.59
LIM2P55344 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIM2P55344 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms