Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC16.05■□□□□ 0.16
CDX1P47902 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDX1P47902 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC16.05■□□□□ 0.16
CDX1P47902 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDX1P47902 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDX1P47902 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC16.05■□□□□ 0.16
CDX1P47902 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDX1P47902 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CDX1P47902 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDX1P47902 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC16.05■□□□□ 0.16
CDX1P47902 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC16.05■□□□□ 0.16
CDX1P47902 PHB2-213ENST00000546111 858 ntTSL 2 BASIC16.05■□□□□ 0.16
CDX1P47902 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC16.05■□□□□ 0.16
CDX1P47902 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC16.05■□□□□ 0.16
CDX1P47902 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC16.05■□□□□ 0.16
CDX1P47902 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC16.05■□□□□ 0.16
CDX1P47902 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC16.05■□□□□ 0.16
CDX1P47902 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDX1P47902 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDX1P47902 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CDX1P47902 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDX1P47902 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC16.04■□□□□ 0.16
CDX1P47902 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CDX1P47902 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDX1P47902 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CDX1P47902 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC16.04■□□□□ 0.16
CDX1P47902 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
CDX1P47902 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDX1P47902 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDX1P47902 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDX1P47902 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC16.04■□□□□ 0.16
CDX1P47902 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDX1P47902 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDX1P47902 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC16.04■□□□□ 0.16
CDX1P47902 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
CDX1P47902 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
CDX1P47902 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CDX1P47902 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC16.04■□□□□ 0.16
CDX1P47902 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC16.04■□□□□ 0.16
CDX1P47902 PTPA-214ENST00000423100 988 ntTSL 2 BASIC16.04■□□□□ 0.16
CDX1P47902 AC007322.3-201ENST00000426526 701 ntBASIC16.04■□□□□ 0.16
CDX1P47902 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC16.04■□□□□ 0.16
CDX1P47902 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC16.04■□□□□ 0.16
CDX1P47902 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CDX1P47902 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC16.04■□□□□ 0.16
CDX1P47902 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CDX1P47902 AC092118.2-201ENST00000613495 667 ntBASIC16.04■□□□□ 0.16
CDX1P47902 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDX1P47902 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC16.04■□□□□ 0.16
CDX1P47902 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC16.04■□□□□ 0.16
CDX1P47902 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDX1P47902 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
CDX1P47902 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDX1P47902 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CDX1P47902 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDX1P47902 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.03■□□□□ 0.16
CDX1P47902 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDX1P47902 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
CDX1P47902 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.03■□□□□ 0.16
CDX1P47902 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC16.03■□□□□ 0.16
CDX1P47902 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDX1P47902 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.03■□□□□ 0.16
CDX1P47902 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDX1P47902 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDX1P47902 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CDX1P47902 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.03■□□□□ 0.16
CDX1P47902 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.03■□□□□ 0.16
CDX1P47902 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CDX1P47902 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC16.03■□□□□ 0.16
CDX1P47902 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDX1P47902 BX276092.2-201ENST00000417668 665 ntBASIC16.03■□□□□ 0.16
CDX1P47902 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDX1P47902 APTR-205ENST00000447009 902 ntTSL 2 BASIC16.03■□□□□ 0.16
CDX1P47902 ISCU-212ENST00000547005 795 ntTSL 3 BASIC16.03■□□□□ 0.16
CDX1P47902 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC16.03■□□□□ 0.16
CDX1P47902 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDX1P47902 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
CDX1P47902 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDX1P47902 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDX1P47902 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC16.03■□□□□ 0.16
CDX1P47902 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
CDX1P47902 AC116050.2-201ENST00000612102 1779 ntBASIC16.03■□□□□ 0.16
CDX1P47902 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDX1P47902 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDX1P47902 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDX1P47902 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
CDX1P47902 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.02■□□□□ 0.16
CDX1P47902 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDX1P47902 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDX1P47902 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.02■□□□□ 0.16
CDX1P47902 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
CDX1P47902 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CDX1P47902 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDX1P47902 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDX1P47902 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDX1P47902 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC16.02■□□□□ 0.16
CDX1P47902 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDX1P47902 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CDX1P47902 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC16.02■□□□□ 0.16
CDX1P47902 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms