Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
MMP3P08254 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MMP3P08254 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.95■■□□□ 1.1
MMP3P08254 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
MMP3P08254 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC21.95■■□□□ 1.1
MMP3P08254 AL137013.1-201ENST00000432946 1228 ntBASIC21.95■■□□□ 1.1
MMP3P08254 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.95■■□□□ 1.1
MMP3P08254 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC21.95■■□□□ 1.1
MMP3P08254 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
MMP3P08254 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
MMP3P08254 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.1
MMP3P08254 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MMP3P08254 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MMP3P08254 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
MMP3P08254 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MMP3P08254 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MMP3P08254 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.94■■□□□ 1.1
MMP3P08254 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
MMP3P08254 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
MMP3P08254 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
MMP3P08254 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
MMP3P08254 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
MMP3P08254 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
MMP3P08254 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.94■■□□□ 1.1
MMP3P08254 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.94■■□□□ 1.1
MMP3P08254 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
MMP3P08254 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
MMP3P08254 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
MMP3P08254 HLA-A-209ENST00000638375 975 ntBASIC21.94■■□□□ 1.1
MMP3P08254 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.94■■□□□ 1.1
MMP3P08254 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
MMP3P08254 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
MMP3P08254 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
MMP3P08254 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
MMP3P08254 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
MMP3P08254 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
MMP3P08254 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
MMP3P08254 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
MMP3P08254 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
MMP3P08254 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.93■■□□□ 1.1
MMP3P08254 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
MMP3P08254 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
MMP3P08254 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.93■■□□□ 1.1
MMP3P08254 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
MMP3P08254 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.93■■□□□ 1.1
MMP3P08254 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.93■■□□□ 1.1
MMP3P08254 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
MMP3P08254 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
MMP3P08254 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
MMP3P08254 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
MMP3P08254 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.92■■□□□ 1.1
MMP3P08254 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MMP3P08254 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.92■■□□□ 1.1
MMP3P08254 BX119927.1-201ENST00000636596 1552 ntBASIC21.92■■□□□ 1.1
MMP3P08254 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
MMP3P08254 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MMP3P08254 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.92■■□□□ 1.1
MMP3P08254 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.92■■□□□ 1.1
MMP3P08254 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.92■■□□□ 1.1
MMP3P08254 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.92■■□□□ 1.1
MMP3P08254 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MMP3P08254 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MMP3P08254 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
MMP3P08254 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC21.92■■□□□ 1.1
MMP3P08254 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC21.92■■□□□ 1.1
MMP3P08254 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC21.92■■□□□ 1.1
MMP3P08254 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MMP3P08254 AC097488.1-201ENST00000507834 756 ntBASIC21.92■■□□□ 1.1
MMP3P08254 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC21.92■■□□□ 1.1
MMP3P08254 C2orf69P3-201ENST00000565542 1120 ntBASIC21.92■■□□□ 1.1
MMP3P08254 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
MMP3P08254 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC21.92■■□□□ 1.1
MMP3P08254 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
MMP3P08254 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
MMP3P08254 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.92■■□□□ 1.1
MMP3P08254 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MMP3P08254 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MMP3P08254 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
MMP3P08254 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC21.91■■□□□ 1.1
MMP3P08254 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MMP3P08254 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
MMP3P08254 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
MMP3P08254 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
MMP3P08254 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MMP3P08254 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MMP3P08254 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.91■■□□□ 1.1
MMP3P08254 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
MMP3P08254 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
MMP3P08254 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21.91■■□□□ 1.1
MMP3P08254 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
MMP3P08254 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.91■■□□□ 1.1
MMP3P08254 RBM42-202ENST00000586618 771 ntTSL 3 BASIC21.91■■□□□ 1.1
MMP3P08254 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC21.91■■□□□ 1.1
MMP3P08254 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MMP3P08254 AL590326.2-201ENST00000625139 305 ntBASIC21.91■■□□□ 1.1
MMP3P08254 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MMP3P08254 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
MMP3P08254 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MMP3P08254 TMEM179-206ENST00000616017 1645 ntBASIC21.91■■□□□ 1.1
MMP3P08254 RCC2P6-201ENST00000526625 1557 ntBASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms