Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC30.19■■■□□ 2.42
COL17A1Q9UMD9 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC30.19■■■□□ 2.42
COL17A1Q9UMD9 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
COL17A1Q9UMD9 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC30.19■■■□□ 2.42
COL17A1Q9UMD9 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
COL17A1Q9UMD9 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC30.19■■■□□ 2.42
COL17A1Q9UMD9 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
COL17A1Q9UMD9 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
COL17A1Q9UMD9 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
COL17A1Q9UMD9 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC30.19■■■□□ 2.42
COL17A1Q9UMD9 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC30.19■■■□□ 2.42
COL17A1Q9UMD9 AC131212.4-201ENST00000623606 975 ntBASIC30.19■■■□□ 2.42
COL17A1Q9UMD9 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
COL17A1Q9UMD9 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL17A1Q9UMD9 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL17A1Q9UMD9 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL17A1Q9UMD9 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
COL17A1Q9UMD9 PRELID1P1-202ENST00000567272 903 ntBASIC30.18■■■□□ 2.42
COL17A1Q9UMD9 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC30.18■■■□□ 2.42
COL17A1Q9UMD9 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC30.18■■■□□ 2.42
COL17A1Q9UMD9 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL17A1Q9UMD9 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC30.17■■■□□ 2.42
COL17A1Q9UMD9 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC30.17■■■□□ 2.42
COL17A1Q9UMD9 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
COL17A1Q9UMD9 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
COL17A1Q9UMD9 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
COL17A1Q9UMD9 LY6E-213ENST00000522528 606 ntTSL 3 BASIC30.17■■■□□ 2.42
COL17A1Q9UMD9 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC30.17■■■□□ 2.42
COL17A1Q9UMD9 AC104692.2-201ENST00000603054 253 ntBASIC30.17■■■□□ 2.42
COL17A1Q9UMD9 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC30.17■■■□□ 2.42
COL17A1Q9UMD9 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
COL17A1Q9UMD9 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC30.17■■■□□ 2.42
COL17A1Q9UMD9 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
COL17A1Q9UMD9 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
COL17A1Q9UMD9 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
COL17A1Q9UMD9 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
COL17A1Q9UMD9 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
COL17A1Q9UMD9 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC30.16■■■□□ 2.42
COL17A1Q9UMD9 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC30.16■■■□□ 2.42
COL17A1Q9UMD9 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC30.16■■■□□ 2.42
COL17A1Q9UMD9 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC30.16■■■□□ 2.42
COL17A1Q9UMD9 CKBP1-201ENST00000565489 1086 ntBASIC30.16■■■□□ 2.42
COL17A1Q9UMD9 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC30.16■■■□□ 2.42
COL17A1Q9UMD9 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC30.16■■■□□ 2.42
COL17A1Q9UMD9 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC30.16■■■□□ 2.42
COL17A1Q9UMD9 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC30.16■■■□□ 2.42
COL17A1Q9UMD9 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC30.16■■■□□ 2.42
COL17A1Q9UMD9 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL17A1Q9UMD9 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL17A1Q9UMD9 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC30.15■■■□□ 2.42
COL17A1Q9UMD9 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
COL17A1Q9UMD9 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL17A1Q9UMD9 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC30.15■■■□□ 2.42
COL17A1Q9UMD9 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC30.15■■■□□ 2.42
COL17A1Q9UMD9 MIR3652-201ENST00000579335 131 ntBASIC30.15■■■□□ 2.42
COL17A1Q9UMD9 AC139530.3-201ENST00000620344 690 ntBASIC30.15■■■□□ 2.42
COL17A1Q9UMD9 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
COL17A1Q9UMD9 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL17A1Q9UMD9 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC30.15■■■□□ 2.42
COL17A1Q9UMD9 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL17A1Q9UMD9 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL17A1Q9UMD9 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL17A1Q9UMD9 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
COL17A1Q9UMD9 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC30.14■■■□□ 2.42
COL17A1Q9UMD9 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
COL17A1Q9UMD9 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC30.14■■■□□ 2.42
COL17A1Q9UMD9 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
COL17A1Q9UMD9 AL031008.1-201ENST00000619963 541 ntBASIC30.14■■■□□ 2.42
COL17A1Q9UMD9 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.42
COL17A1Q9UMD9 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC30.14■■■□□ 2.42
COL17A1Q9UMD9 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC30.14■■■□□ 2.41
COL17A1Q9UMD9 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC30.14■■■□□ 2.41
COL17A1Q9UMD9 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC30.14■■■□□ 2.41
COL17A1Q9UMD9 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
COL17A1Q9UMD9 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC30.13■■■□□ 2.41
COL17A1Q9UMD9 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC30.13■■■□□ 2.41
COL17A1Q9UMD9 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
COL17A1Q9UMD9 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
COL17A1Q9UMD9 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC30.13■■■□□ 2.41
COL17A1Q9UMD9 STK25-204ENST00000405585 1643 ntTSL 2 BASIC30.13■■■□□ 2.41
COL17A1Q9UMD9 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC30.13■■■□□ 2.41
COL17A1Q9UMD9 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
COL17A1Q9UMD9 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC30.12■■■□□ 2.41
COL17A1Q9UMD9 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC30.12■■■□□ 2.41
COL17A1Q9UMD9 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
COL17A1Q9UMD9 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
COL17A1Q9UMD9 GXYLT1P4-201ENST00000613576 1192 ntBASIC30.12■■■□□ 2.41
COL17A1Q9UMD9 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC30.12■■■□□ 2.41
COL17A1Q9UMD9 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC30.12■■■□□ 2.41
COL17A1Q9UMD9 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC30.12■■■□□ 2.41
COL17A1Q9UMD9 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC30.12■■■□□ 2.41
COL17A1Q9UMD9 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
COL17A1Q9UMD9 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC30.12■■■□□ 2.41
COL17A1Q9UMD9 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC30.12■■■□□ 2.41
COL17A1Q9UMD9 AL353719.1-201ENST00000566847 864 ntBASIC30.12■■■□□ 2.41
COL17A1Q9UMD9 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC30.12■■■□□ 2.41
COL17A1Q9UMD9 GALC-202ENST00000393568 2054 ntTSL 2 BASIC30.12■■■□□ 2.41
COL17A1Q9UMD9 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
COL17A1Q9UMD9 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC30.11■■■□□ 2.41
COL17A1Q9UMD9 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC30.11■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms