Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH12P55289 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CDH12P55289 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDH12P55289 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.42■□□□□ 0.54
CDH12P55289 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH12P55289 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH12P55289 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH12P55289 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH12P55289 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CDH12P55289 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH12P55289 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CDH12P55289 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH12P55289 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH12P55289 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH12P55289 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.41■□□□□ 0.54
CDH12P55289 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH12P55289 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
CDH12P55289 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH12P55289 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CDH12P55289 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.41■□□□□ 0.54
CDH12P55289 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.41■□□□□ 0.54
CDH12P55289 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.41■□□□□ 0.54
CDH12P55289 DUX4L16-201ENST00000555130 1264 ntBASIC18.41■□□□□ 0.54
CDH12P55289 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.41■□□□□ 0.54
CDH12P55289 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CDH12P55289 AC011767.1-201ENST00000617410 1153 ntBASIC18.41■□□□□ 0.54
CDH12P55289 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH12P55289 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH12P55289 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.41■□□□□ 0.54
CDH12P55289 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CDH12P55289 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH12P55289 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH12P55289 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH12P55289 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CDH12P55289 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CDH12P55289 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH12P55289 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.41■□□□□ 0.54
CDH12P55289 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.41■□□□□ 0.54
CDH12P55289 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CDH12P55289 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
CDH12P55289 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CDH12P55289 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH12P55289 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH12P55289 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH12P55289 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH12P55289 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDH12P55289 AC006015.1-201ENST00000429970 570 ntBASIC18.4■□□□□ 0.54
CDH12P55289 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
CDH12P55289 CNN2P6-201ENST00000439038 900 ntBASIC18.4■□□□□ 0.54
CDH12P55289 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.4■□□□□ 0.54
CDH12P55289 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.4■□□□□ 0.54
CDH12P55289 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.4■□□□□ 0.54
CDH12P55289 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.4■□□□□ 0.54
CDH12P55289 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.4■□□□□ 0.54
CDH12P55289 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDH12P55289 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDH12P55289 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.4■□□□□ 0.54
CDH12P55289 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH12P55289 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDH12P55289 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
CDH12P55289 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
CDH12P55289 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.39■□□□□ 0.54
CDH12P55289 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CDH12P55289 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.39■□□□□ 0.54
CDH12P55289 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CDH12P55289 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.39■□□□□ 0.53
CDH12P55289 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CDH12P55289 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CDH12P55289 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.39■□□□□ 0.53
CDH12P55289 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CDH12P55289 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 AC068338.2-201ENST00000563278 1430 ntBASIC18.39■□□□□ 0.53
CDH12P55289 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
CDH12P55289 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
CDH12P55289 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH12P55289 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH12P55289 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH12P55289 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
CDH12P55289 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH12P55289 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH12P55289 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH12P55289 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CDH12P55289 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms