Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.7■□□□□ 0.9
HOXA9P31269 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXA9P31269 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXA9P31269 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXA9P31269 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXA9P31269 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXA9P31269 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.69■□□□□ 0.9
HOXA9P31269 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HOXA9P31269 AC004980.1-204ENST00000429707 299 ntBASIC20.69■□□□□ 0.9
HOXA9P31269 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXA9P31269 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXA9P31269 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXA9P31269 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.69■□□□□ 0.9
HOXA9P31269 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.69■□□□□ 0.9
HOXA9P31269 C2orf69P3-201ENST00000565542 1120 ntBASIC20.69■□□□□ 0.9
HOXA9P31269 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
HOXA9P31269 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXA9P31269 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXA9P31269 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HOXA9P31269 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXA9P31269 AC007225.1-201ENST00000566331 1836 ntBASIC20.69■□□□□ 0.9
HOXA9P31269 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXA9P31269 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXA9P31269 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXA9P31269 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
HOXA9P31269 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
HOXA9P31269 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXA9P31269 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXA9P31269 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXA9P31269 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXA9P31269 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.68■□□□□ 0.9
HOXA9P31269 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.68■□□□□ 0.9
HOXA9P31269 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.68■□□□□ 0.9
HOXA9P31269 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXA9P31269 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXA9P31269 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
HOXA9P31269 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.68■□□□□ 0.9
HOXA9P31269 AC131212.4-201ENST00000623606 975 ntBASIC20.68■□□□□ 0.9
HOXA9P31269 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.68■□□□□ 0.9
HOXA9P31269 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.68■□□□□ 0.9
HOXA9P31269 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.68■□□□□ 0.9
HOXA9P31269 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HOXA9P31269 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.67■□□□□ 0.9
HOXA9P31269 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA9P31269 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXA9P31269 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA9P31269 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA9P31269 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.67■□□□□ 0.9
HOXA9P31269 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.67■□□□□ 0.9
HOXA9P31269 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXA9P31269 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.67■□□□□ 0.9
HOXA9P31269 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA9P31269 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.67■□□□□ 0.9
HOXA9P31269 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXA9P31269 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA9P31269 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA9P31269 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA9P31269 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA9P31269 AC092720.2-201ENST00000602388 1665 ntBASIC20.67■□□□□ 0.9
HOXA9P31269 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
HOXA9P31269 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.67■□□□□ 0.9
HOXA9P31269 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXA9P31269 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA9P31269 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA9P31269 TSPY14P-201ENST00000303979 915 ntBASIC20.66■□□□□ 0.9
HOXA9P31269 ARMC10P1-201ENST00000313754 855 ntBASIC20.66■□□□□ 0.9
HOXA9P31269 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA9P31269 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXA9P31269 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.66■□□□□ 0.9
HOXA9P31269 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXA9P31269 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXA9P31269 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.66■□□□□ 0.9
HOXA9P31269 EGLN1P1-201ENST00000531623 762 ntBASIC20.66■□□□□ 0.9
HOXA9P31269 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXA9P31269 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXA9P31269 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA9P31269 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA9P31269 PHGDH-210ENST00000641115 1638 ntBASIC20.66■□□□□ 0.9
HOXA9P31269 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.66■□□□□ 0.9
HOXA9P31269 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.66■□□□□ 0.9
HOXA9P31269 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.66■□□□□ 0.9
HOXA9P31269 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXA9P31269 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
HOXA9P31269 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA9P31269 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA9P31269 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA9P31269 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA9P31269 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA9P31269 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
HOXA9P31269 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA9P31269 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.65■□□□□ 0.9
HOXA9P31269 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.65■□□□□ 0.9
HOXA9P31269 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA9P31269 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA9P31269 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA9P31269 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA9P31269 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA9P31269 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA9P31269 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
HOXA9P31269 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms