Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 TPM1-226ENST00000560959 925 ntTSL 2 BASIC25.5■■□□□ 1.67
PTCD1O75127 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC25.5■■□□□ 1.67
PTCD1O75127 AC018553.1-201ENST00000616682 1458 ntBASIC25.5■■□□□ 1.67
PTCD1O75127 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
PTCD1O75127 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
PTCD1O75127 AC006128.1-201ENST00000624704 1661 ntBASIC25.49■■□□□ 1.67
PTCD1O75127 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PTCD1O75127 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PTCD1O75127 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
PTCD1O75127 DUX4L26-201ENST00000489078 1255 ntBASIC25.49■■□□□ 1.67
PTCD1O75127 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
PTCD1O75127 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC25.49■■□□□ 1.67
PTCD1O75127 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC25.49■■□□□ 1.67
PTCD1O75127 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PTCD1O75127 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
PTCD1O75127 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC25.49■■□□□ 1.67
PTCD1O75127 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTCD1O75127 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTCD1O75127 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
PTCD1O75127 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTCD1O75127 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC25.48■■□□□ 1.67
PTCD1O75127 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC25.48■■□□□ 1.67
PTCD1O75127 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTCD1O75127 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTCD1O75127 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
PTCD1O75127 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTCD1O75127 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTCD1O75127 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTCD1O75127 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
PTCD1O75127 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTCD1O75127 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC25.48■■□□□ 1.67
PTCD1O75127 ECEL1P2-202ENST00000465689 757 ntBASIC25.48■■□□□ 1.67
PTCD1O75127 RNF146-204ENST00000476956 884 ntTSL 2 BASIC25.48■■□□□ 1.67
PTCD1O75127 NTF6B-201ENST00000591913 560 ntBASIC25.48■■□□□ 1.67
PTCD1O75127 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTCD1O75127 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC25.48■■□□□ 1.67
PTCD1O75127 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTCD1O75127 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
PTCD1O75127 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC25.48■■□□□ 1.67
PTCD1O75127 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC25.48■■□□□ 1.67
PTCD1O75127 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PTCD1O75127 AC007225.1-201ENST00000566331 1836 ntBASIC25.47■■□□□ 1.67
PTCD1O75127 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PTCD1O75127 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PTCD1O75127 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PTCD1O75127 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
PTCD1O75127 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC25.47■■□□□ 1.67
PTCD1O75127 AC004980.1-204ENST00000429707 299 ntBASIC25.47■■□□□ 1.67
PTCD1O75127 AC026271.3-201ENST00000571884 352 ntBASIC25.47■■□□□ 1.67
PTCD1O75127 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
PTCD1O75127 GRAMD4P8-201ENST00000605465 1115 ntBASIC25.47■■□□□ 1.67
PTCD1O75127 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PTCD1O75127 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PTCD1O75127 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC25.46■■□□□ 1.67
PTCD1O75127 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
PTCD1O75127 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC25.46■■□□□ 1.67
PTCD1O75127 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
PTCD1O75127 KRT18P16-201ENST00000510337 1294 ntBASIC25.46■■□□□ 1.67
PTCD1O75127 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC25.46■■□□□ 1.67
PTCD1O75127 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
PTCD1O75127 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
PTCD1O75127 CLN6-221ENST00000637494 765 ntTSL 5 BASIC25.46■■□□□ 1.67
PTCD1O75127 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC25.46■■□□□ 1.67
PTCD1O75127 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PTCD1O75127 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
PTCD1O75127 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PTCD1O75127 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC25.46■■□□□ 1.67
PTCD1O75127 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC25.46■■□□□ 1.67
PTCD1O75127 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
PTCD1O75127 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC25.46■■□□□ 1.67
PTCD1O75127 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PTCD1O75127 KRT16P6-202ENST00000425692 1426 ntBASIC25.46■■□□□ 1.67
PTCD1O75127 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.67
PTCD1O75127 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.67
PTCD1O75127 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC25.45■■□□□ 1.67
PTCD1O75127 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
PTCD1O75127 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
PTCD1O75127 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC25.45■■□□□ 1.66
PTCD1O75127 CRYGFP-201ENST00000418459 633 ntBASIC25.45■■□□□ 1.66
PTCD1O75127 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
PTCD1O75127 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC25.45■■□□□ 1.66
PTCD1O75127 YBX1P10-201ENST00000444752 975 ntBASIC25.45■■□□□ 1.66
PTCD1O75127 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC25.45■■□□□ 1.66
PTCD1O75127 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
PTCD1O75127 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
PTCD1O75127 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
PTCD1O75127 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC25.45■■□□□ 1.66
PTCD1O75127 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC25.45■■□□□ 1.66
PTCD1O75127 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC25.45■■□□□ 1.66
PTCD1O75127 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC25.45■■□□□ 1.66
PTCD1O75127 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
PTCD1O75127 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC25.44■■□□□ 1.66
PTCD1O75127 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
PTCD1O75127 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
PTCD1O75127 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
PTCD1O75127 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
PTCD1O75127 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC25.44■■□□□ 1.66
PTCD1O75127 INGX-201ENST00000359239 846 ntBASIC25.44■■□□□ 1.66
PTCD1O75127 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
PTCD1O75127 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC25.44■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms