Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 RARRES2P6-201ENST00000567333 442 ntBASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 AL589743.5-201ENST00000616611 1050 ntBASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.72■□□□□ 0.91
PCDHA3Q9Y5H8 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 PHGDH-210ENST00000641115 1638 ntBASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 AL512625.2-201ENST00000417533 625 ntBASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.71■□□□□ 0.91
PCDHA3Q9Y5H8 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
PCDHA3Q9Y5H8 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHA3Q9Y5H8 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.7■□□□□ 0.9
PCDHA3Q9Y5H8 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.7■□□□□ 0.9
PCDHA3Q9Y5H8 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHA3Q9Y5H8 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.9
PCDHA3Q9Y5H8 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
PCDHA3Q9Y5H8 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.7■□□□□ 0.9
PCDHA3Q9Y5H8 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.7■□□□□ 0.9
PCDHA3Q9Y5H8 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.7■□□□□ 0.9
PCDHA3Q9Y5H8 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHA3Q9Y5H8 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHA3Q9Y5H8 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHA3Q9Y5H8 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHA3Q9Y5H8 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 KRT17P1-201ENST00000399211 1546 ntBASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms