Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 SRR-208ENST00000576848 588 ntTSL 4 BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 GRAMD4P7-201ENST00000578182 1232 ntBASIC18.73■□□□□ 0.59
AP4S1Q9Y587 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.73■□□□□ 0.59
AP4S1Q9Y587 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 MIR4466-201ENST00000606121 54 ntBASIC18.72■□□□□ 0.59
AP4S1Q9Y587 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 CROCCP3-202ENST00000420820 1947 ntBASIC18.72■□□□□ 0.59
AP4S1Q9Y587 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
AP4S1Q9Y587 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
AP4S1Q9Y587 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
AP4S1Q9Y587 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.71■□□□□ 0.59
AP4S1Q9Y587 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.71■□□□□ 0.59
AP4S1Q9Y587 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
AP4S1Q9Y587 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.71■□□□□ 0.59
AP4S1Q9Y587 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
AP4S1Q9Y587 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.71■□□□□ 0.59
AP4S1Q9Y587 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
AP4S1Q9Y587 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
AP4S1Q9Y587 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
AP4S1Q9Y587 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
AP4S1Q9Y587 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
AP4S1Q9Y587 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
AP4S1Q9Y587 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.71■□□□□ 0.59
AP4S1Q9Y587 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
AP4S1Q9Y587 AC005332.8-201ENST00000622750 2735 ntBASIC18.71■□□□□ 0.59
AP4S1Q9Y587 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
AP4S1Q9Y587 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms