Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 LIMCH1-218ENST00000513024 5129 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CUX1P39880 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC10.74□□□□□ -0.69
CUX1P39880 ATP2B4-203ENST00000357681 8968 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CUX1P39880 GRB10-207ENST00000402578 4760 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CUX1P39880 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
CUX1P39880 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
CUX1P39880 AL356481.1-202ENST00000426704 970 ntTSL 2 BASIC10.74□□□□□ -0.69
CUX1P39880 TRIM2-203ENST00000437508 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CUX1P39880 HMGN1P36-201ENST00000446623 298 ntBASIC10.74□□□□□ -0.69
CUX1P39880 RN7SL326P-201ENST00000477493 296 ntBASIC10.74□□□□□ -0.69
CUX1P39880 RN7SL561P-201ENST00000488553 281 ntBASIC10.74□□□□□ -0.69
CUX1P39880 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC10.74□□□□□ -0.69
CUX1P39880 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC10.74□□□□□ -0.69
CUX1P39880 AC023245.2-201ENST00000530760 2978 ntBASIC10.74□□□□□ -0.69
CUX1P39880 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CUX1P39880 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CUX1P39880 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC10.74□□□□□ -0.69
CUX1P39880 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC10.74□□□□□ -0.69
CUX1P39880 KIAA0319-206ENST00000616673 5315 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CUX1P39880 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CUX1P39880 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CUX1P39880 EYA3-203ENST00000373871 6085 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CUX1P39880 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
CUX1P39880 KIAA1024-201ENST00000305428 6732 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CUX1P39880 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CUX1P39880 AC007485.2-201ENST00000623493 1667 ntBASIC10.73□□□□□ -0.69
CUX1P39880 GINS4-209ENST00000523277 3873 ntTSL 5 BASIC10.73□□□□□ -0.69
CUX1P39880 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CUX1P39880 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CUX1P39880 LRP1-201ENST00000243077 14897 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CUX1P39880 RARSP1-201ENST00000542842 1418 ntBASIC10.73□□□□□ -0.69
CUX1P39880 SNORA21-201ENST00000362423 132 ntBASIC10.73□□□□□ -0.69
CUX1P39880 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CUX1P39880 BRWD1P3-201ENST00000428816 390 ntBASIC10.73□□□□□ -0.69
CUX1P39880 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC10.73□□□□□ -0.69
CUX1P39880 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC10.73□□□□□ -0.69
CUX1P39880 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC10.73□□□□□ -0.69
CUX1P39880 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC10.73□□□□□ -0.69
CUX1P39880 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC10.73□□□□□ -0.69
CUX1P39880 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CUX1P39880 MIR3176-201ENST00000582210 90 ntBASIC10.73□□□□□ -0.69
CUX1P39880 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC10.73□□□□□ -0.69
CUX1P39880 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC10.73□□□□□ -0.69
CUX1P39880 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CUX1P39880 POTEH-AS1-201ENST00000422014 2566 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CUX1P39880 ABCA6-201ENST00000284425 5300 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CUX1P39880 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
CUX1P39880 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC10.72□□□□□ -0.69
CUX1P39880 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC10.72□□□□□ -0.69
CUX1P39880 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC10.72□□□□□ -0.69
CUX1P39880 MELK-207ENST00000536860 2342 ntTSL 2 BASIC10.72□□□□□ -0.69
CUX1P39880 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CUX1P39880 IGLV3-4-201ENST00000432300 244 ntBASIC10.72□□□□□ -0.69
CUX1P39880 CLUHP1-201ENST00000435012 1190 ntBASIC10.72□□□□□ -0.69
CUX1P39880 GAPDHP48-201ENST00000436626 961 ntBASIC10.72□□□□□ -0.69
CUX1P39880 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CUX1P39880 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC10.72□□□□□ -0.69
CUX1P39880 RPS4XP14-201ENST00000493072 781 ntBASIC10.72□□□□□ -0.69
CUX1P39880 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC10.72□□□□□ -0.69
CUX1P39880 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC10.72□□□□□ -0.69
CUX1P39880 OR7E18P-201ENST00000592589 702 ntBASIC10.72□□□□□ -0.69
CUX1P39880 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC10.72□□□□□ -0.69
CUX1P39880 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC10.72□□□□□ -0.69
CUX1P39880 AC012653.2-201ENST00000621880 420 ntBASIC10.72□□□□□ -0.69
CUX1P39880 KCNA2-205ENST00000633222 11877 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
CUX1P39880 RECQL-204ENST00000444129 3702 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
CUX1P39880 SLC9A4-201ENST00000295269 4138 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CUX1P39880 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CUX1P39880 HIPK1-201ENST00000340480 6997 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CUX1P39880 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CUX1P39880 LINC02275-201ENST00000508313 4365 ntTSL 2 BASIC10.72□□□□□ -0.69
CUX1P39880 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC10.72□□□□□ -0.69
CUX1P39880 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CUX1P39880 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
CUX1P39880 STAMBP-202ENST00000394070 6691 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CUX1P39880 ESRG-201ENST00000583516 3140 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
CUX1P39880 XIAP-202ENST00000371199 8591 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CUX1P39880 CDH13-201ENST00000268613 2722 ntAPPRIS P4 TSL 2 BASIC10.71□□□□□ -0.69
CUX1P39880 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC10.71□□□□□ -0.69
CUX1P39880 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC10.71□□□□□ -0.69
CUX1P39880 IGHV3-57-201ENST00000520143 280 ntBASIC10.71□□□□□ -0.69
CUX1P39880 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC10.71□□□□□ -0.69
CUX1P39880 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC10.71□□□□□ -0.69
CUX1P39880 AC092121.1-201ENST00000569452 202 ntBASIC10.71□□□□□ -0.69
CUX1P39880 AC025171.4-201ENST00000607250 1047 ntBASIC10.71□□□□□ -0.69
CUX1P39880 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
CUX1P39880 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC10.71□□□□□ -0.69
CUX1P39880 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC10.71□□□□□ -0.69
CUX1P39880 AC073488.3-201ENST00000631611 778 ntBASIC10.71□□□□□ -0.69
CUX1P39880 IL1RAP-201ENST00000072516 4697 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CUX1P39880 CACNB4-269ENST00000638005 4615 ntTSL 2 BASIC10.71□□□□□ -0.7
CUX1P39880 TP63-201ENST00000264731 4909 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
CUX1P39880 PBRM1-206ENST00000409114 5015 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
CUX1P39880 WDR19-207ENST00000506503 2513 ntTSL 2 BASIC10.71□□□□□ -0.7
CUX1P39880 WDR19-201ENST00000399820 4520 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
CUX1P39880 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
CUX1P39880 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC10.7□□□□□ -0.7
CUX1P39880 COL6A6-201ENST00000358511 9581 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
CUX1P39880 C11orf54-202ENST00000354421 1733 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
CUX1P39880 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms