RNA–Protein interactions for RNA: ENST00000358511.10

COL6A6-201, Transcript of collagen type VI alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL6A6, Length 9,581 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6-201ENST00000358511 PELP1Q8IZL8 1130 aaKnown RBP14.29□□□□□ -0.12
COL6A6-201ENST00000358511 MYT1Q01538 1121 aa14.11□□□□□ -0.15
COL6A6-201ENST00000358511 DCAF8L2P0C7V8 631 aa13.99□□□□□ -0.17
COL6A6-201ENST00000358511 SUPT5HO00267 1087 aaKnown RBP13.89□□□□□ -0.19
COL6A6-201ENST00000358511 NISCHQ9Y2I1 1504 aa13.84□□□□□ -0.19
COL6A6-201ENST00000358511 CENPBP07199 599 aaPredicted RBP13.73□□□□□ -0.21
COL6A6-201ENST00000358511 PCGF6Q9BYE7 350 aa13.63□□□□□ -0.23
COL6A6-201ENST00000358511 ZEB1P37275 1124 aaPredicted RBP13.61□□□□□ -0.23
COL6A6-201ENST00000358511 ERICH6Q7L0X2 663 aa13.57□□□□□ -0.24
COL6A6-201ENST00000358511 SHROOM4Q9ULL8 1493 aa13.55□□□□□ -0.24
COL6A6-201ENST00000358511 CCER1Q8TC90 406 aaPredicted RBP13.55□□□□□ -0.24
COL6A6-201ENST00000358511 EHMT2Q96KQ7 1210 aa13.35□□□□□ -0.27
COL6A6-201ENST00000358511 APLP2Q06481 763 aa13.34□□□□□ -0.27
COL6A6-201ENST00000358511 NEFLP07196 543 aa13.24□□□□□ -0.29
COL6A6-201ENST00000358511 HRCP23327 699 aa13.21□□□□□ -0.29
COL6A6-201ENST00000358511 YTHDC1Q96MU7 727 aaKnown RBP13.15□□□□□ -0.3
COL6A6-201ENST00000358511 TTBK1Q5TCY1 1321 aaPredicted RBP13.07□□□□□ -0.32
COL6A6-201ENST00000358511 FAM9AQ8IZU1 332 aaPredicted RBP13.05□□□□□ -0.32
COL6A6-201ENST00000358511 TRIM26Q12899 539 aaPredicted RBP13.04□□□□□ -0.32
COL6A6-201ENST00000358511 TRIM41Q8WV44 630 aa12.91□□□□□ -0.34
COL6A6-201ENST00000358511 DAXXQ9UER7 740 aaPredicted RBP12.86□□□□□ -0.35
COL6A6-201ENST00000358511 RTL5Q5HYW3 569 aaPredicted RBP12.79□□□□□ -0.36
COL6A6-201ENST00000358511 PPARGC1BQ86YN6 1023 aaKnown RBP12.77□□□□□ -0.36
COL6A6-201ENST00000358511 DIEXFQ68CQ4 756 aaKnown RBP12.74□□□□□ -0.37
COL6A6-201ENST00000358511 UBTFP17480 764 aaKnown RBP12.71□□□□□ -0.37
COL6A6-201ENST00000358511 GTF3C3Q9Y5Q9 886 aa12.68□□□□□ -0.38
COL6A6-201ENST00000358511 RANGAP1P46060 587 aaPredicted RBP12.65□□□□□ -0.39
COL6A6-201ENST00000358511 ZNF316A6NFI3 1004 aaPredicted RBP12.59□□□□□ -0.39
COL6A6-201ENST00000358511 ACIN1Q9UKV3 1341 aaKnown RBP12.52□□□□□ -0.4
COL6A6-201ENST00000358511 ATP1B4Q9UN42 357 aaPredicted RBP12.51□□□□□ -0.41
COL6A6-201ENST00000358511 CHIC1Q5VXU3 224 aa12.5□□□□□ -0.41
COL6A6-201ENST00000358511 CLSPNQ9HAW4 1339 aa12.49□□□□□ -0.41
COL6A6-201ENST00000358511 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.49□□□□□ -0.41
COL6A6-201ENST00000358511 LOC105371045A0A1W2PR82 267 aa12.48□□□□□ -0.41
COL6A6-201ENST00000358511 CDK11AQ9UQ88 783 aaPredicted RBP12.45□□□□□ -0.42
COL6A6-201ENST00000358511 MYT1LQ9UL68 1186 aa12.41□□□□□ -0.42
COL6A6-201ENST00000358511 HNRNPUL2Q1KMD3 747 aaKnown RBP12.38□□□□□ -0.43
COL6A6-201ENST00000358511 BCANQ96GW7 911 aa12.38□□□□□ -0.43
COL6A6-201ENST00000358511 GLIPR1L2Q4G1C9 344 aa12.36□□□□□ -0.43
COL6A6-201ENST00000358511 ANP32AP39687 249 aaKnown RBP12.31□□□□□ -0.44
COL6A6-201ENST00000358511 ITGAEP38570 1179 aa12.31□□□□□ -0.44
COL6A6-201ENST00000358511 POLR3GLQ9BT43 218 aa12.3□□□□□ -0.44
COL6A6-201ENST00000358511 EIF5BO60841 1220 aaKnown RBP12.27□□□□□ -0.44
COL6A6-201ENST00000358511 DCAF1Q9Y4B6 1507 aa12.26□□□□□ -0.45
COL6A6-201ENST00000358511 ANP32CO43423 234 aa12.26□□□□□ -0.45
COL6A6-201ENST00000358511 SCAF1Q9H7N4 1312 aaKnown RBP12.24□□□□□ -0.45
COL6A6-201ENST00000358511 CCDC180Q9P1Z9 1646 aa12.2□□□□□ -0.46
COL6A6-201ENST00000358511 CNGB1Q14028 1251 aaPredicted RBP12.16□□□□□ -0.46
COL6A6-201ENST00000358511 NEUROD1Q13562 356 aa12.13□□□□□ -0.47
COL6A6-201ENST00000358511 SLC4A1APQ9BWU0 796 aaKnown RBP12.1□□□□□ -0.47
COL6A6-201ENST00000358511 ANP32BQ92688 251 aaKnown RBP12.09□□□□□ -0.47
COL6A6-201ENST00000358511 FKBP8Q14318 412 aa12.08□□□□□ -0.48
COL6A6-201ENST00000358511 ANP32EQ9BTT0 268 aa12.04□□□□□ -0.48
COL6A6-201ENST00000358511 NBR1Q14596 966 aa12.04□□□□□ -0.48
COL6A6-201ENST00000358511 NPM2Q86SE8 214 aaKnown RBP12.03□□□□□ -0.48
COL6A6-201ENST00000358511 FAM50AQ14320 339 aaKnown RBP12.02□□□□□ -0.49
COL6A6-201ENST00000358511 ZBTB47Q9UFB7 747 aaPredicted RBP11.98□□□□□ -0.49
COL6A6-201ENST00000358511 CANXP27824 592 aaKnown RBP11.96□□□□□ -0.49
COL6A6-201ENST00000358511 SLC24A1O60721 1099 aa11.93□□□□□ -0.5
COL6A6-201ENST00000358511 BCL11AQ9H165 835 aa11.93□□□□□ -0.5
COL6A6-201ENST00000358511 UPF2Q9HAU5 1272 aaKnown RBP11.93□□□□□ -0.5
COL6A6-201ENST00000358511 TRIM52Q96A61 297 aa11.9□□□□□ -0.5
COL6A6-201ENST00000358511 HSP90AA1P07900 732 aaKnown RBP11.89□□□□□ -0.51
COL6A6-201ENST00000358511 HNRNPUQ00839 825 aaKnown RBP eCLIP11.89□□□□□ -0.51
COL6A6-201ENST00000358511 CCDC136Q96JN2 1154 aa11.86□□□□□ -0.51
COL6A6-201ENST00000358511 ZNF326Q5BKZ1 582 aaKnown RBP11.82□□□□□ -0.52
COL6A6-201ENST00000358511 MIER1Q8N108 512 aa11.82□□□□□ -0.52
COL6A6-201ENST00000358511 TONSLQ96HA7 1378 aa11.8□□□□□ -0.52
COL6A6-201ENST00000358511 TNNT2P45379 298 aaPredicted RBP11.8□□□□□ -0.52
COL6A6-201ENST00000358511 DDRGK1Q96HY6 314 aa11.79□□□□□ -0.52
COL6A6-201ENST00000358511 ERICH6BQ5W0A0 696 aa11.78□□□□□ -0.52
COL6A6-201ENST00000358511 ARXQ96QS3 562 aa11.76□□□□□ -0.53
COL6A6-201ENST00000358511 DDX10Q13206 875 aaKnown RBP11.76□□□□□ -0.53
COL6A6-201ENST00000358511 TRIM44Q96DX7 344 aaPredicted RBP11.75□□□□□ -0.53
COL6A6-201ENST00000358511 NEFMP07197 916 aa11.75□□□□□ -0.53
COL6A6-201ENST00000358511 MYO15BQ96JP2 1530 aa11.74□□□□□ -0.53
COL6A6-201ENST00000358511 FAM9BQ8IZU0 186 aa11.72□□□□□ -0.53
COL6A6-201ENST00000358511 BECN1Q14457 450 aa11.72□□□□□ -0.53
COL6A6-201ENST00000358511 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.71□□□□□ -0.54
COL6A6-201ENST00000358511 NOP58Q9Y2X3 529 aaKnown RBP11.7□□□□□ -0.54
COL6A6-201ENST00000358511 PPM1GO15355 546 aaPredicted RBP11.68□□□□□ -0.54
COL6A6-201ENST00000358511 CDK11BP21127 795 aaKnown RBP11.67□□□□□ -0.54
COL6A6-201ENST00000358511 SUPT16HQ9Y5B9 1047 aaKnown RBP11.67□□□□□ -0.54
COL6A6-201ENST00000358511 IRX6P78412 446 aaPredicted RBP11.66□□□□□ -0.54
COL6A6-201ENST00000358511 RTN4Q9NQC3 1192 aaKnown RBP11.66□□□□□ -0.54
COL6A6-201ENST00000358511 NAP1L5Q96NT1 182 aaPredicted RBP11.66□□□□□ -0.54
COL6A6-201ENST00000358511 TMC1Q8TDI8 760 aa11.64□□□□□ -0.55
COL6A6-201ENST00000358511 MRS2Q9HD23 443 aa11.64□□□□□ -0.55
COL6A6-201ENST00000358511 DEKP35659 375 aaKnown RBP11.64□□□□□ -0.55
COL6A6-201ENST00000358511 CSRNP3Q8WYN3 585 aa11.63□□□□□ -0.55
COL6A6-201ENST00000358511 GOLGA6L22H0YM25 854 aa11.61□□□□□ -0.55
COL6A6-201ENST00000358511 NCBP3Q53F19 620 aaKnown RBP11.61□□□□□ -0.55
COL6A6-201ENST00000358511 SCRIBQ14160 1630 aa11.58□□□□□ -0.56
COL6A6-201ENST00000358511 NCLP19338 710 aaKnown RBP11.56□□□□□ -0.56
COL6A6-201ENST00000358511 PPP4R2Q9NY27 417 aa11.56□□□□□ -0.56
COL6A6-201ENST00000358511 ZCCHC6Q5VYS8 1495 aaKnown RBP11.55□□□□□ -0.56
COL6A6-201ENST00000358511 LAS1LQ9Y4W2 734 aaKnown RBP11.55□□□□□ -0.56
COL6A6-201ENST00000358511 RBM19Q9Y4C8 960 aaKnown RBP11.54□□□□□ -0.56
COL6A6-201ENST00000358511 DNTTIP2Q5QJE6 756 aaKnown RBP11.52□□□□□ -0.56
COL6A6-201ENST00000358511 SALL2Q9Y467 1007 aaPredicted RBP11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms