RNA–Protein interactions for RNA: ENST00000618999.4

SRGAP3-213, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 5 BASIC

Gene SRGAP3, Length 3,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-213ENST00000618999 NISCHQ9Y2I1 1504 aa14.8□□□□□ -0.04
SRGAP3-213ENST00000618999 CHIC1Q5VXU3 224 aa13.85□□□□□ -0.19
SRGAP3-213ENST00000618999 AEBP2Q6ZN18 517 aaPredicted RBP13.45□□□□□ -0.26
SRGAP3-213ENST00000618999 EHMT2Q96KQ7 1210 aa12.87□□□□□ -0.35
SRGAP3-213ENST00000618999 CCDC180Q9P1Z9 1646 aa12.75□□□□□ -0.37
SRGAP3-213ENST00000618999 DCAF8L2P0C7V8 631 aa12.64□□□□□ -0.39
SRGAP3-213ENST00000618999 PHF23Q9BUL5 403 aaPredicted RBP12.44□□□□□ -0.42
SRGAP3-213ENST00000618999 ZCCHC6Q5VYS8 1495 aaKnown RBP12.39□□□□□ -0.43
SRGAP3-213ENST00000618999 SHROOM4Q9ULL8 1493 aa12.36□□□□□ -0.43
SRGAP3-213ENST00000618999 ABCC9O60706 1549 aa12.35□□□□□ -0.43
SRGAP3-213ENST00000618999 DCAF1Q9Y4B6 1507 aa12.13□□□□□ -0.47
SRGAP3-213ENST00000618999 SLC24A1O60721 1099 aa12.09□□□□□ -0.47
SRGAP3-213ENST00000618999 NACADO15069 1562 aa11.98□□□□□ -0.49
SRGAP3-213ENST00000618999 SUPT5HO00267 1087 aaKnown RBP11.96□□□□□ -0.49
SRGAP3-213ENST00000618999 MYO15BQ96JP2 1530 aa11.96□□□□□ -0.49
SRGAP3-213ENST00000618999 SCRIBQ14160 1630 aa11.92□□□□□ -0.5
SRGAP3-213ENST00000618999 RB1CC1Q8TDY2 1594 aa11.9□□□□□ -0.5
SRGAP3-213ENST00000618999 PLPPR3Q6T4P5 718 aa11.81□□□□□ -0.52
SRGAP3-213ENST00000618999 KCNA4P22459 653 aa11.8□□□□□ -0.52
SRGAP3-213ENST00000618999 PABPN1Q86U42 306 aaKnown RBP eCLIP11.75□□□□□ -0.53
SRGAP3-213ENST00000618999 CECR2Q9BXF3 1484 aa11.57□□□□□ -0.56
SRGAP3-213ENST00000618999 RTN4Q9NQC3 1192 aaKnown RBP11.56□□□□□ -0.56
SRGAP3-213ENST00000618999 RSF1Q96T23 1441 aaPredicted RBP11.54□□□□□ -0.56
SRGAP3-213ENST00000618999 UNC13AQ9UPW8 1703 aa11.52□□□□□ -0.56
SRGAP3-213ENST00000618999 CSRNP3Q8WYN3 585 aa11.49□□□□□ -0.57
SRGAP3-213ENST00000618999 BICRAQ9NZM4 1560 aa11.48□□□□□ -0.57
SRGAP3-213ENST00000618999 MROH2BQ7Z745 1585 aa11.47□□□□□ -0.57
SRGAP3-213ENST00000618999 ADRA2BP18089 450 aa11.46□□□□□ -0.57
SRGAP3-213ENST00000618999 BAZ1AQ9NRL2 1556 aaPredicted RBP11.43□□□□□ -0.58
SRGAP3-213ENST00000618999 SLC4A1APQ9BWU0 796 aaKnown RBP11.39□□□□□ -0.59
SRGAP3-213ENST00000618999 WIZO95785 1651 aa11.35□□□□□ -0.59
SRGAP3-213ENST00000618999 SMARCA4P51532 1647 aa11.34□□□□□ -0.59
SRGAP3-213ENST00000618999 HRCP23327 699 aa11.33□□□□□ -0.6
SRGAP3-213ENST00000618999 PCGF6Q9BYE7 350 aa11.28□□□□□ -0.6
SRGAP3-213ENST00000618999 ATAD2BQ9ULI0 1458 aa11.22□□□□□ -0.61
SRGAP3-213ENST00000618999 TOP2AP11388 1531 aaKnown RBP11.2□□□□□ -0.62
SRGAP3-213ENST00000618999 EIF4G1Q04637 1599 aaKnown RBP11.2□□□□□ -0.62
SRGAP3-213ENST00000618999 BAZ1BQ9UIG0 1483 aaKnown RBP11.2□□□□□ -0.62
SRGAP3-213ENST00000618999 TRIM41Q8WV44 630 aa11.19□□□□□ -0.62
SRGAP3-213ENST00000618999 SMARCA2P51531 1590 aa11.18□□□□□ -0.62
SRGAP3-213ENST00000618999 CCDC88BA6NC98 1476 aa11.16□□□□□ -0.62
SRGAP3-213ENST00000618999 PEG3Q9GZU2 1588 aa11.12□□□□□ -0.63
SRGAP3-213ENST00000618999 NCAPD3P42695 1498 aa11.09□□□□□ -0.63
SRGAP3-213ENST00000618999 AMER1Q5JTC6 1135 aaPredicted RBP11.09□□□□□ -0.63
SRGAP3-213ENST00000618999 FAM9AQ8IZU1 332 aaPredicted RBP11.09□□□□□ -0.63
SRGAP3-213ENST00000618999 SENP3Q9H4L4 574 aaPredicted RBP11.08□□□□□ -0.64
SRGAP3-213ENST00000618999 PPARGC1BQ86YN6 1023 aaKnown RBP11.05□□□□□ -0.64
SRGAP3-213ENST00000618999 CC2D2AQ9P2K1 1620 aa11.04□□□□□ -0.64
SRGAP3-213ENST00000618999 HMGXB3Q12766 1538 aa11.01□□□□□ -0.65
SRGAP3-213ENST00000618999 LOC105371045A0A1W2PR82 267 aa10.98□□□□□ -0.65
SRGAP3-213ENST00000618999 PRKCSHP14314 528 aaPredicted RBP10.98□□□□□ -0.65
SRGAP3-213ENST00000618999 TRIM26Q12899 539 aaPredicted RBP10.95□□□□□ -0.66
SRGAP3-213ENST00000618999 ABCC8Q09428 1581 aa10.95□□□□□ -0.66
SRGAP3-213ENST00000618999 ZEB1P37275 1124 aaPredicted RBP10.93□□□□□ -0.66
SRGAP3-213ENST00000618999 DNAJC5BQ9UF47 199 aa10.92□□□□□ -0.66
SRGAP3-213ENST00000618999 PPP6R1Q9UPN7 881 aa10.91□□□□□ -0.66
SRGAP3-213ENST00000618999 WRNQ14191 1432 aaPredicted RBP eCLIP10.91□□□□□ -0.66
SRGAP3-213ENST00000618999 CADPSQ9ULU8 1353 aa10.89□□□□□ -0.67
SRGAP3-213ENST00000618999 PELP1Q8IZL8 1130 aaKnown RBP10.89□□□□□ -0.67
SRGAP3-213ENST00000618999 CFTRP13569 1480 aa10.86□□□□□ -0.67
SRGAP3-213ENST00000618999 SOGA1O94964 1423 aa10.79□□□□□ -0.68
SRGAP3-213ENST00000618999 NESP48681 1621 aa10.79□□□□□ -0.68
SRGAP3-213ENST00000618999 UBTFP17480 764 aaKnown RBP10.77□□□□□ -0.69
SRGAP3-213ENST00000618999 SYNJ1O43426 1573 aa10.76□□□□□ -0.69
SRGAP3-213ENST00000618999 FANCD2Q9BXW9 1451 aa10.76□□□□□ -0.69
SRGAP3-213ENST00000618999 ZBTB22O15209 634 aa10.74□□□□□ -0.69
SRGAP3-213ENST00000618999 RUSC2Q8N2Y8 1516 aa10.73□□□□□ -0.69
SRGAP3-213ENST00000618999 PDS5BQ9NTI5 1447 aa10.72□□□□□ -0.69
SRGAP3-213ENST00000618999 EEA1Q15075 1411 aa10.71□□□□□ -0.7
SRGAP3-213ENST00000618999 FKBP8Q14318 412 aa10.7□□□□□ -0.7
SRGAP3-213ENST00000618999 CUX1P39880 1505 aa10.7□□□□□ -0.7
SRGAP3-213ENST00000618999 TOP2BQ02880 1626 aa10.69□□□□□ -0.7
SRGAP3-213ENST00000618999 CEP164Q9UPV0 1460 aa10.68□□□□□ -0.7
SRGAP3-213ENST00000618999 RANGAP1P46060 587 aaPredicted RBP10.68□□□□□ -0.7
SRGAP3-213ENST00000618999 LAMC3Q9Y6N6 1575 aa10.68□□□□□ -0.7
SRGAP3-213ENST00000618999 PPP4R3CPQ6ZMV5 832 aa10.67□□□□□ -0.7
SRGAP3-213ENST00000618999 HAP1P54257 671 aaPredicted RBP10.66□□□□□ -0.7
SRGAP3-213ENST00000618999 KIF27Q86VH2 1401 aa10.65□□□□□ -0.71
SRGAP3-213ENST00000618999 FGD5Q6ZNL6 1462 aa10.63□□□□□ -0.71
SRGAP3-213ENST00000618999 CUX2O14529 1486 aa10.63□□□□□ -0.71
SRGAP3-213ENST00000618999 BIVM-ERCC5R4GMW8 1640 aa10.62□□□□□ -0.71
SRGAP3-213ENST00000618999 CCER1Q8TC90 406 aaPredicted RBP10.61□□□□□ -0.71
SRGAP3-213ENST00000618999 ERCC6Q03468 1493 aa10.61□□□□□ -0.71
SRGAP3-213ENST00000618999 PRDM2Q13029 1718 aa10.61□□□□□ -0.71
SRGAP3-213ENST00000618999 TOPBP1Q92547 1522 aa10.61□□□□□ -0.71
SRGAP3-213ENST00000618999 NPM3O75607 178 aaKnown RBP10.6□□□□□ -0.71
SRGAP3-213ENST00000618999 GOLGA3Q08378 1498 aa10.59□□□□□ -0.71
SRGAP3-213ENST00000618999 RAD54L2Q9Y4B4 1467 aa10.59□□□□□ -0.71
SRGAP3-213ENST00000618999 CENPBP07199 599 aaPredicted RBP10.59□□□□□ -0.71
SRGAP3-213ENST00000618999 DNMBPQ6XZF7 1577 aa10.58□□□□□ -0.72
SRGAP3-213ENST00000618999 URB2Q14146 1524 aaKnown RBP10.58□□□□□ -0.72
SRGAP3-213ENST00000618999 NCBP3Q53F19 620 aaKnown RBP10.57□□□□□ -0.72
SRGAP3-213ENST00000618999 TNIKQ9UKE5 1360 aa10.57□□□□□ -0.72
SRGAP3-213ENST00000618999 POLA1P09884 1462 aaPredicted RBP10.57□□□□□ -0.72
SRGAP3-213ENST00000618999 TDRD9Q8NDG6 1382 aaKnown RBP10.55□□□□□ -0.72
SRGAP3-213ENST00000618999 SCAF1Q9H7N4 1312 aaKnown RBP10.55□□□□□ -0.72
SRGAP3-213ENST00000618999 RAPGEF2Q9Y4G8 1499 aa10.55□□□□□ -0.72
SRGAP3-213ENST00000618999 IGF1RP08069 1367 aa10.54□□□□□ -0.72
SRGAP3-213ENST00000618999 CEP162Q5TB80 1403 aa10.54□□□□□ -0.72
SRGAP3-213ENST00000618999 TPRNQ4KMQ1 711 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms