RNA–Protein interactions for RNA: ENST00000558966.5

CTDSPL2-204, Transcript of CTD small phosphatase like 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSPL2, Length 1,895 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-204ENST00000558966 AEBP2Q6ZN18 517 aaPredicted RBP17.01■□□□□ 0.31
CTDSPL2-204ENST00000558966 CHIC1Q5VXU3 224 aa16.95■□□□□ 0.3
CTDSPL2-204ENST00000558966 PHF23Q9BUL5 403 aaPredicted RBP15□□□□□ -0.01
CTDSPL2-204ENST00000558966 NISCHQ9Y2I1 1504 aa14.8□□□□□ -0.04
CTDSPL2-204ENST00000558966 SENP3Q9H4L4 574 aaPredicted RBP14.29□□□□□ -0.12
CTDSPL2-204ENST00000558966 PLPPR3Q6T4P5 718 aa13.93□□□□□ -0.18
CTDSPL2-204ENST00000558966 FOXD1Q16676 465 aa13.27□□□□□ -0.29
CTDSPL2-204ENST00000558966 CCDC180Q9P1Z9 1646 aa13.19□□□□□ -0.3
CTDSPL2-204ENST00000558966 ADRA2BP18089 450 aa13.14□□□□□ -0.31
CTDSPL2-204ENST00000558966 PPP6R1Q9UPN7 881 aa13.12□□□□□ -0.31
CTDSPL2-204ENST00000558966 ABCC9O60706 1549 aa12.96□□□□□ -0.33
CTDSPL2-204ENST00000558966 PIAS4Q8N2W9 510 aaPredicted RBP12.61□□□□□ -0.39
CTDSPL2-204ENST00000558966 KCNA4P22459 653 aa12.57□□□□□ -0.4
CTDSPL2-204ENST00000558966 RB1CC1Q8TDY2 1594 aa12.44□□□□□ -0.42
CTDSPL2-204ENST00000558966 NACADO15069 1562 aa12.4□□□□□ -0.42
CTDSPL2-204ENST00000558966 PPP4R3CPQ6ZMV5 832 aa12.36□□□□□ -0.43
CTDSPL2-204ENST00000558966 DCAF8L2P0C7V8 631 aa12.34□□□□□ -0.43
CTDSPL2-204ENST00000558966 ZCCHC6Q5VYS8 1495 aaKnown RBP12.33□□□□□ -0.44
CTDSPL2-204ENST00000558966 MYO15BQ96JP2 1530 aa12.32□□□□□ -0.44
CTDSPL2-204ENST00000558966 DCAF1Q9Y4B6 1507 aa12.25□□□□□ -0.45
CTDSPL2-204ENST00000558966 EHMT2Q96KQ7 1210 aa12.21□□□□□ -0.45
CTDSPL2-204ENST00000558966 UNC13AQ9UPW8 1703 aa12.19□□□□□ -0.46
CTDSPL2-204ENST00000558966 BICRAQ9NZM4 1560 aa12.1□□□□□ -0.47
CTDSPL2-204ENST00000558966 NCBP3Q53F19 620 aaKnown RBP12.1□□□□□ -0.47
CTDSPL2-204ENST00000558966 PABPN1Q86U42 306 aaKnown RBP eCLIP12.09□□□□□ -0.47
CTDSPL2-204ENST00000558966 SCRIBQ14160 1630 aa12.04□□□□□ -0.48
CTDSPL2-204ENST00000558966 SLC4A1APQ9BWU0 796 aaKnown RBP12.02□□□□□ -0.49
CTDSPL2-204ENST00000558966 MSH5O43196 834 aa12□□□□□ -0.49
CTDSPL2-204ENST00000558966 NPM3O75607 178 aaKnown RBP11.98□□□□□ -0.49
CTDSPL2-204ENST00000558966 DNAJC5BQ9UF47 199 aa11.96□□□□□ -0.49
CTDSPL2-204ENST00000558966 SHROOM4Q9ULL8 1493 aa11.93□□□□□ -0.5
CTDSPL2-204ENST00000558966 SCAF1Q9H7N4 1312 aaKnown RBP11.91□□□□□ -0.5
CTDSPL2-204ENST00000558966 CNKSR2Q8WXI2 1034 aa11.89□□□□□ -0.51
CTDSPL2-204ENST00000558966 POTEDQ86YR6 584 aa11.88□□□□□ -0.51
CTDSPL2-204ENST00000558966 CSRNP3Q8WYN3 585 aa11.85□□□□□ -0.51
CTDSPL2-204ENST00000558966 MAPK8IP2Q13387 824 aaPredicted RBP11.81□□□□□ -0.52
CTDSPL2-204ENST00000558966 EIF4G1Q04637 1599 aaKnown RBP11.76□□□□□ -0.53
CTDSPL2-204ENST00000558966 CC2D2AQ9P2K1 1620 aa11.73□□□□□ -0.53
CTDSPL2-204ENST00000558966 CECR2Q9BXF3 1484 aa11.65□□□□□ -0.54
CTDSPL2-204ENST00000558966 ZBTB22O15209 634 aa11.59□□□□□ -0.55
CTDSPL2-204ENST00000558966 RNF216Q9NWF9 866 aaPredicted RBP11.55□□□□□ -0.56
CTDSPL2-204ENST00000558966 SMARCA4P51532 1647 aa11.51□□□□□ -0.57
CTDSPL2-204ENST00000558966 DMRT2Q9Y5R5 561 aa11.48□□□□□ -0.57
CTDSPL2-204ENST00000558966 BAZ1AQ9NRL2 1556 aaPredicted RBP11.47□□□□□ -0.57
CTDSPL2-204ENST00000558966 NCAPD3P42695 1498 aa11.45□□□□□ -0.58
CTDSPL2-204ENST00000558966 ATAD2BQ9ULI0 1458 aa11.45□□□□□ -0.58
CTDSPL2-204ENST00000558966 SMARCA2P51531 1590 aa11.43□□□□□ -0.58
CTDSPL2-204ENST00000558966 MROH2BQ7Z745 1585 aa11.42□□□□□ -0.58
CTDSPL2-204ENST00000558966 HMGXB3Q12766 1538 aa11.4□□□□□ -0.58
CTDSPL2-204ENST00000558966 PEG3Q9GZU2 1588 aa11.4□□□□□ -0.58
CTDSPL2-204ENST00000558966 FOXD4L1Q9NU39 408 aa11.4□□□□□ -0.59
CTDSPL2-204ENST00000558966 HOXD11P31277 338 aaPredicted RBP11.39□□□□□ -0.59
CTDSPL2-204ENST00000558966 BAZ1BQ9UIG0 1483 aaKnown RBP11.34□□□□□ -0.59
CTDSPL2-204ENST00000558966 WIZO95785 1651 aa11.29□□□□□ -0.6
CTDSPL2-204ENST00000558966 RSF1Q96T23 1441 aaPredicted RBP11.26□□□□□ -0.61
CTDSPL2-204ENST00000558966 SLC4A2P04920 1241 aa11.23□□□□□ -0.61
CTDSPL2-204ENST00000558966 NESP48681 1621 aa11.22□□□□□ -0.61
CTDSPL2-204ENST00000558966 LAMC3Q9Y6N6 1575 aa11.16□□□□□ -0.62
CTDSPL2-204ENST00000558966 ERCC6Q03468 1493 aa11.16□□□□□ -0.62
CTDSPL2-204ENST00000558966 TOP2AP11388 1531 aaKnown RBP11.16□□□□□ -0.62
CTDSPL2-204ENST00000558966 CADPSQ9ULU8 1353 aa11.1□□□□□ -0.63
CTDSPL2-204ENST00000558966 KIF21AQ7Z4S6 1674 aa11.09□□□□□ -0.63
CTDSPL2-204ENST00000558966 CUX2O14529 1486 aa11.08□□□□□ -0.64
CTDSPL2-204ENST00000558966 THOC2Q8NI27 1593 aaKnown RBP11.07□□□□□ -0.64
CTDSPL2-204ENST00000558966 PDS5BQ9NTI5 1447 aa11.07□□□□□ -0.64
CTDSPL2-204ENST00000558966 CFTRP13569 1480 aa11.04□□□□□ -0.64
CTDSPL2-204ENST00000558966 DCAF8L1A6NGE4 600 aa11.04□□□□□ -0.64
CTDSPL2-204ENST00000558966 MYCNP04198 464 aaPredicted RBP11.02□□□□□ -0.64
CTDSPL2-204ENST00000558966 CCDC88BA6NC98 1476 aa11.02□□□□□ -0.65
CTDSPL2-204ENST00000558966 FANCD2Q9BXW9 1451 aa10.99□□□□□ -0.65
CTDSPL2-204ENST00000558966 MRC2Q9UBG0 1479 aa10.98□□□□□ -0.65
CTDSPL2-204ENST00000558966 CEP164Q9UPV0 1460 aa10.97□□□□□ -0.65
CTDSPL2-204ENST00000558966 PRDM2Q13029 1718 aa10.97□□□□□ -0.65
CTDSPL2-204ENST00000558966 WDR62O43379 1518 aa10.96□□□□□ -0.66
CTDSPL2-204ENST00000558966 ATXN8OSP0DMR3 200 aa10.91□□□□□ -0.66
CTDSPL2-204ENST00000558966 URB2Q14146 1524 aaKnown RBP10.9□□□□□ -0.66
CTDSPL2-204ENST00000558966 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.89□□□□□ -0.671e-6■■■□□ 19
CTDSPL2-204ENST00000558966 SUPT5HO00267 1087 aaKnown RBP10.88□□□□□ -0.67
CTDSPL2-204ENST00000558966 TOPBP1Q92547 1522 aa10.81□□□□□ -0.68
CTDSPL2-204ENST00000558966 DNAJC5Q9H3Z4 198 aa10.8□□□□□ -0.68
CTDSPL2-204ENST00000558966 DNMBPQ6XZF7 1577 aa10.79□□□□□ -0.68
CTDSPL2-204ENST00000558966 ATF5Q9Y2D1 282 aaPredicted RBP10.78□□□□□ -0.68
CTDSPL2-204ENST00000558966 ABCC8Q09428 1581 aa10.77□□□□□ -0.68
CTDSPL2-204ENST00000558966 U3KPZ7 1027 aaPredicted RBP10.77□□□□□ -0.69
CTDSPL2-204ENST00000558966 IFT140Q96RY7 1462 aa10.74□□□□□ -0.69
CTDSPL2-204ENST00000558966 ZNF608Q9ULD9 1512 aaPredicted RBP10.72□□□□□ -0.69
CTDSPL2-204ENST00000558966 CUX1P39880 1505 aa10.72□□□□□ -0.69
CTDSPL2-204ENST00000558966 POLA1P09884 1462 aaPredicted RBP10.72□□□□□ -0.69
CTDSPL2-204ENST00000558966 TARBP1Q13395 1621 aaKnown RBP10.71□□□□□ -0.69
CTDSPL2-204ENST00000558966 SAMD1Q6SPF0 538 aaPredicted RBP10.7□□□□□ -0.7
CTDSPL2-204ENST00000558966 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.69□□□□□ -0.7
CTDSPL2-204ENST00000558966 FKBP8Q14318 412 aa10.69□□□□□ -0.7
CTDSPL2-204ENST00000558966 HNRNPUL2Q1KMD3 747 aaKnown RBP10.69□□□□□ -0.7
CTDSPL2-204ENST00000558966 EIF4G3O43432 1585 aaKnown RBP10.68□□□□□ -0.7
CTDSPL2-204ENST00000558966 FGD5Q6ZNL6 1462 aa10.68□□□□□ -0.7
CTDSPL2-204ENST00000558966 RAD54L2Q9Y4B4 1467 aa10.67□□□□□ -0.7
CTDSPL2-204ENST00000558966 SOGA1O94964 1423 aa10.65□□□□□ -0.7
CTDSPL2-204ENST00000558966 AQRO60306 1485 aaKnown RBP eCLIP10.64□□□□□ -0.71
CTDSPL2-204ENST00000558966 WDR97A6NE52 1622 aa10.62□□□□□ -0.71
CTDSPL2-204ENST00000558966 SYNJ1O43426 1573 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms