Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 AC084018.2-201ENST00000613093 2607 ntBASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 REST-206ENST00000612429 1376 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 REST-207ENST00000616975 1370 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 BX664725.1-201ENST00000438252 379 ntBASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 MKRN4P-201ENST00000444706 1521 ntBASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28AQ8IWP9 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC16.58■□□□□ 0.25
CCDC28AQ8IWP9 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.58■□□□□ 0.25
CCDC28AQ8IWP9 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
CCDC28AQ8IWP9 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.58■□□□□ 0.25
CCDC28AQ8IWP9 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.58■□□□□ 0.25
CCDC28AQ8IWP9 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC28AQ8IWP9 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
CCDC28AQ8IWP9 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC28AQ8IWP9 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.58■□□□□ 0.25
CCDC28AQ8IWP9 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.24
CCDC28AQ8IWP9 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 DUX4L4-201ENST00000566884 1269 ntBASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms