Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
KRT39Q6A163 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
KRT39Q6A163 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
KRT39Q6A163 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.5■■□□□ 1.03
KRT39Q6A163 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.5■■□□□ 1.03
KRT39Q6A163 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
KRT39Q6A163 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.5■■□□□ 1.03
KRT39Q6A163 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.5■■□□□ 1.03
KRT39Q6A163 PNMA6B-201ENST00000538162 1200 ntBASIC21.5■■□□□ 1.03
KRT39Q6A163 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.5■■□□□ 1.03
KRT39Q6A163 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.5■■□□□ 1.03
KRT39Q6A163 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
KRT39Q6A163 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.5■■□□□ 1.03
KRT39Q6A163 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.5■■□□□ 1.03
KRT39Q6A163 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
KRT39Q6A163 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
KRT39Q6A163 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.5■■□□□ 1.03
KRT39Q6A163 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
KRT39Q6A163 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.5■■□□□ 1.03
KRT39Q6A163 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
KRT39Q6A163 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
KRT39Q6A163 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.49■■□□□ 1.03
KRT39Q6A163 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
KRT39Q6A163 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
KRT39Q6A163 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
KRT39Q6A163 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
KRT39Q6A163 PHGDH-210ENST00000641115 1638 ntBASIC21.49■■□□□ 1.03
KRT39Q6A163 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
KRT39Q6A163 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
KRT39Q6A163 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
KRT39Q6A163 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
KRT39Q6A163 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.49■■□□□ 1.03
KRT39Q6A163 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
KRT39Q6A163 REXO2-208ENST00000539754 791 ntTSL 2 BASIC21.49■■□□□ 1.03
KRT39Q6A163 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.49■■□□□ 1.03
KRT39Q6A163 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.49■■□□□ 1.03
KRT39Q6A163 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
KRT39Q6A163 AC006557.6-201ENST00000623071 864 ntBASIC21.49■■□□□ 1.03
KRT39Q6A163 AFG3L1P-217ENST00000557444 2447 ntBASIC21.49■■□□□ 1.03
KRT39Q6A163 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
KRT39Q6A163 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
KRT39Q6A163 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
KRT39Q6A163 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.48■■□□□ 1.03
KRT39Q6A163 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.48■■□□□ 1.03
KRT39Q6A163 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
KRT39Q6A163 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
KRT39Q6A163 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.48■■□□□ 1.03
KRT39Q6A163 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
KRT39Q6A163 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
KRT39Q6A163 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
KRT39Q6A163 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.48■■□□□ 1.03
KRT39Q6A163 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.48■■□□□ 1.03
KRT39Q6A163 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC21.48■■□□□ 1.03
KRT39Q6A163 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
KRT39Q6A163 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
KRT39Q6A163 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.48■■□□□ 1.03
KRT39Q6A163 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
KRT39Q6A163 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
KRT39Q6A163 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
KRT39Q6A163 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
KRT39Q6A163 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
KRT39Q6A163 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21.47■■□□□ 1.03
KRT39Q6A163 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.47■■□□□ 1.03
KRT39Q6A163 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.47■■□□□ 1.03
KRT39Q6A163 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.47■■□□□ 1.03
KRT39Q6A163 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.47■■□□□ 1.03
KRT39Q6A163 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.47■■□□□ 1.03
KRT39Q6A163 AC009237.14-201ENST00000609975 1594 ntBASIC21.47■■□□□ 1.03
KRT39Q6A163 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
KRT39Q6A163 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
KRT39Q6A163 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.47■■□□□ 1.03
KRT39Q6A163 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
KRT39Q6A163 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
KRT39Q6A163 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
KRT39Q6A163 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
KRT39Q6A163 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.46■■□□□ 1.03
KRT39Q6A163 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
KRT39Q6A163 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
KRT39Q6A163 AP001271.2-201ENST00000624018 1556 ntBASIC21.46■■□□□ 1.03
KRT39Q6A163 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.46■■□□□ 1.03
KRT39Q6A163 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
KRT39Q6A163 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.46■■□□□ 1.03
KRT39Q6A163 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.46■■□□□ 1.03
KRT39Q6A163 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
KRT39Q6A163 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.46■■□□□ 1.03
KRT39Q6A163 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.46■■□□□ 1.03
KRT39Q6A163 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
KRT39Q6A163 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
KRT39Q6A163 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
KRT39Q6A163 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
KRT39Q6A163 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.45■■□□□ 1.02
KRT39Q6A163 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
KRT39Q6A163 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
KRT39Q6A163 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
KRT39Q6A163 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.45■■□□□ 1.02
KRT39Q6A163 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.45■■□□□ 1.02
KRT39Q6A163 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
KRT39Q6A163 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
KRT39Q6A163 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
KRT39Q6A163 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms