Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC17.48■□□□□ 0.39
SOX2P48431 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SOX2P48431 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX2P48431 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SOX2P48431 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX2P48431 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SOX2P48431 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX2P48431 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
SOX2P48431 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SOX2P48431 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX2P48431 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX2P48431 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.47■□□□□ 0.39
SOX2P48431 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX2P48431 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SOX2P48431 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX2P48431 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX2P48431 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX2P48431 CDV3P1-201ENST00000471403 739 ntBASIC17.47■□□□□ 0.39
SOX2P48431 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC17.47■□□□□ 0.39
SOX2P48431 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC17.47■□□□□ 0.39
SOX2P48431 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC17.47■□□□□ 0.39
SOX2P48431 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SOX2P48431 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SOX2P48431 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SOX2P48431 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.47■□□□□ 0.39
SOX2P48431 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.47■□□□□ 0.39
SOX2P48431 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SOX2P48431 TNXA-203ENST00000507684 2038 ntBASIC17.47■□□□□ 0.39
SOX2P48431 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.47■□□□□ 0.39
SOX2P48431 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX2P48431 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SOX2P48431 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
SOX2P48431 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SOX2P48431 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.47■□□□□ 0.39
SOX2P48431 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX2P48431 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX2P48431 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX2P48431 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX2P48431 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.46■□□□□ 0.39
SOX2P48431 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.46■□□□□ 0.39
SOX2P48431 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX2P48431 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX2P48431 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SOX2P48431 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.46■□□□□ 0.39
SOX2P48431 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SOX2P48431 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX2P48431 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX2P48431 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX2P48431 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.46■□□□□ 0.39
SOX2P48431 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX2P48431 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX2P48431 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SOX2P48431 AC004854.2-201ENST00000608450 1441 ntBASIC17.46■□□□□ 0.39
SOX2P48431 AC019069.1-201ENST00000610008 1333 ntBASIC17.46■□□□□ 0.38
SOX2P48431 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX2P48431 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX2P48431 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SOX2P48431 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SOX2P48431 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX2P48431 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX2P48431 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX2P48431 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX2P48431 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.45■□□□□ 0.38
SOX2P48431 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.45■□□□□ 0.38
SOX2P48431 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SOX2P48431 AK1-201ENST00000223836 736 ntTSL 3 BASIC17.45■□□□□ 0.38
SOX2P48431 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.45■□□□□ 0.38
SOX2P48431 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.45■□□□□ 0.38
SOX2P48431 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.45■□□□□ 0.38
SOX2P48431 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC17.45■□□□□ 0.38
SOX2P48431 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC17.45■□□□□ 0.38
SOX2P48431 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SOX2P48431 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SOX2P48431 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SOX2P48431 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX2P48431 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX2P48431 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SOX2P48431 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.45■□□□□ 0.38
SOX2P48431 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.45■□□□□ 0.38
SOX2P48431 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.45■□□□□ 0.38
SOX2P48431 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SOX2P48431 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX2P48431 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.44■□□□□ 0.38
SOX2P48431 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX2P48431 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX2P48431 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX2P48431 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX2P48431 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.44■□□□□ 0.38
SOX2P48431 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX2P48431 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC17.44■□□□□ 0.38
SOX2P48431 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX2P48431 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC17.44■□□□□ 0.38
SOX2P48431 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
SOX2P48431 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC17.44■□□□□ 0.38
SOX2P48431 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC17.44■□□□□ 0.38
SOX2P48431 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.44■□□□□ 0.38
SOX2P48431 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC17.44■□□□□ 0.38
SOX2P48431 AC005837.3-201ENST00000612163 286 ntBASIC17.44■□□□□ 0.38
SOX2P48431 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SOX2P48431 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms