Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC24.07■■□□□ 1.44
COL4A5P29400 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
COL4A5P29400 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
COL4A5P29400 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL4A5P29400 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL4A5P29400 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL4A5P29400 HMGA1P5-201ENST00000412453 271 ntBASIC24.06■■□□□ 1.44
COL4A5P29400 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC24.06■■□□□ 1.44
COL4A5P29400 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC24.06■■□□□ 1.44
COL4A5P29400 KRT18P16-201ENST00000510337 1294 ntBASIC24.06■■□□□ 1.44
COL4A5P29400 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
COL4A5P29400 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL4A5P29400 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL4A5P29400 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
COL4A5P29400 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
COL4A5P29400 LSR-203ENST00000360798 1963 ntTSL 2 BASIC24.05■■□□□ 1.44
COL4A5P29400 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
COL4A5P29400 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC24.05■■□□□ 1.44
COL4A5P29400 HIST1H2APS4-201ENST00000362070 348 ntBASIC24.05■■□□□ 1.44
COL4A5P29400 BX664615.1-201ENST00000443558 458 ntBASIC24.05■■□□□ 1.44
COL4A5P29400 AC128688.1-201ENST00000487626 519 ntBASIC24.05■■□□□ 1.44
COL4A5P29400 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
COL4A5P29400 CLN6-204ENST00000564752 900 ntTSL 3 BASIC24.05■■□□□ 1.44
COL4A5P29400 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC24.05■■□□□ 1.44
COL4A5P29400 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC24.05■■□□□ 1.44
COL4A5P29400 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC24.05■■□□□ 1.44
COL4A5P29400 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
COL4A5P29400 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC24.05■■□□□ 1.44
COL4A5P29400 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
COL4A5P29400 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC24.05■■□□□ 1.44
COL4A5P29400 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC24.05■■□□□ 1.44
COL4A5P29400 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
COL4A5P29400 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
COL4A5P29400 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC24.05■■□□□ 1.44
COL4A5P29400 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC24.05■■□□□ 1.44
COL4A5P29400 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
COL4A5P29400 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC24.05■■□□□ 1.44
COL4A5P29400 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC24.05■■□□□ 1.44
COL4A5P29400 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
COL4A5P29400 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC24.04■■□□□ 1.44
COL4A5P29400 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC24.04■■□□□ 1.44
COL4A5P29400 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC24.04■■□□□ 1.44
COL4A5P29400 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
COL4A5P29400 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC24.04■■□□□ 1.44
COL4A5P29400 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC24.04■■□□□ 1.44
COL4A5P29400 BET1L-202ENST00000332865 533 ntTSL 5 BASIC24.04■■□□□ 1.44
COL4A5P29400 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
COL4A5P29400 CD70-202ENST00000423145 881 ntTSL 2 BASIC24.04■■□□□ 1.44
COL4A5P29400 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
COL4A5P29400 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC24.04■■□□□ 1.44
COL4A5P29400 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC24.04■■□□□ 1.44
COL4A5P29400 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC24.04■■□□□ 1.44
COL4A5P29400 AC116351.2-201ENST00000606540 1585 ntBASIC24.04■■□□□ 1.44
COL4A5P29400 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
COL4A5P29400 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
COL4A5P29400 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
COL4A5P29400 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
COL4A5P29400 AP000550.4-202ENST00000639755 178 ntBASIC24.03■■□□□ 1.44
COL4A5P29400 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL4A5P29400 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL4A5P29400 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC24.03■■□□□ 1.44
COL4A5P29400 KRT8P17-201ENST00000453110 1448 ntBASIC24.03■■□□□ 1.44
COL4A5P29400 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC24.03■■□□□ 1.44
COL4A5P29400 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
COL4A5P29400 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL4A5P29400 AC096733.2-201ENST00000609937 1394 ntBASIC24.03■■□□□ 1.44
COL4A5P29400 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL4A5P29400 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC24.03■■□□□ 1.44
COL4A5P29400 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL4A5P29400 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL4A5P29400 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
COL4A5P29400 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC24.02■■□□□ 1.44
COL4A5P29400 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
COL4A5P29400 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC24.02■■□□□ 1.44
COL4A5P29400 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
COL4A5P29400 TFP1-202ENST00000475455 1573 ntBASIC24.02■■□□□ 1.44
COL4A5P29400 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC24.02■■□□□ 1.44
COL4A5P29400 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
COL4A5P29400 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC24.02■■□□□ 1.44
COL4A5P29400 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
COL4A5P29400 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
COL4A5P29400 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
COL4A5P29400 KRT126P-201ENST00000549467 1181 ntBASIC24.02■■□□□ 1.44
COL4A5P29400 SLC25A1P4-201ENST00000567977 778 ntBASIC24.02■■□□□ 1.44
COL4A5P29400 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
COL4A5P29400 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
COL4A5P29400 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC24.01■■□□□ 1.43
COL4A5P29400 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC24.01■■□□□ 1.43
COL4A5P29400 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
COL4A5P29400 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
COL4A5P29400 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
COL4A5P29400 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC24.01■■□□□ 1.43
COL4A5P29400 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
COL4A5P29400 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
COL4A5P29400 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
COL4A5P29400 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
COL4A5P29400 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
COL4A5P29400 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
COL4A5P29400 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC24.01■■□□□ 1.43
COL4A5P29400 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms