Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
RTF1Q92541 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
RTF1Q92541 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC26.06■■□□□ 1.76
RTF1Q92541 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC26.05■■□□□ 1.76
RTF1Q92541 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC26.05■■□□□ 1.76
RTF1Q92541 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
RTF1Q92541 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC26.05■■□□□ 1.76
RTF1Q92541 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
RTF1Q92541 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC26.05■■□□□ 1.76
RTF1Q92541 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
RTF1Q92541 KRT16P5-201ENST00000455284 522 ntBASIC26.05■■□□□ 1.76
RTF1Q92541 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
RTF1Q92541 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC26.05■■□□□ 1.76
RTF1Q92541 AP001412.1-201ENST00000608405 714 ntBASIC26.05■■□□□ 1.76
RTF1Q92541 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC26.05■■□□□ 1.76
RTF1Q92541 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC26.05■■□□□ 1.76
RTF1Q92541 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC26.05■■□□□ 1.76
RTF1Q92541 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
RTF1Q92541 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC26.05■■□□□ 1.76
RTF1Q92541 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
RTF1Q92541 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC26.04■■□□□ 1.76
RTF1Q92541 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
RTF1Q92541 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
RTF1Q92541 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
RTF1Q92541 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
RTF1Q92541 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
RTF1Q92541 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC26.04■■□□□ 1.76
RTF1Q92541 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC26.04■■□□□ 1.76
RTF1Q92541 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC26.04■■□□□ 1.76
RTF1Q92541 REXO2-216ENST00000544196 452 ntTSL 3 BASIC26.04■■□□□ 1.76
RTF1Q92541 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
RTF1Q92541 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
RTF1Q92541 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
RTF1Q92541 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
RTF1Q92541 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC26.04■■□□□ 1.76
RTF1Q92541 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
RTF1Q92541 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
RTF1Q92541 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
RTF1Q92541 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
RTF1Q92541 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
RTF1Q92541 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
RTF1Q92541 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
RTF1Q92541 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
RTF1Q92541 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
RTF1Q92541 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
RTF1Q92541 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
RTF1Q92541 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
RTF1Q92541 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC26.03■■□□□ 1.76
RTF1Q92541 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC26.03■■□□□ 1.76
RTF1Q92541 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
RTF1Q92541 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC26.03■■□□□ 1.76
RTF1Q92541 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
RTF1Q92541 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC26.03■■□□□ 1.76
RTF1Q92541 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
RTF1Q92541 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC26.03■■□□□ 1.76
RTF1Q92541 CLDN5-201ENST00000403084 2357 ntBASIC26.03■■□□□ 1.76
RTF1Q92541 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC26.03■■□□□ 1.76
RTF1Q92541 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
RTF1Q92541 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
RTF1Q92541 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
RTF1Q92541 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
RTF1Q92541 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
RTF1Q92541 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
RTF1Q92541 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
RTF1Q92541 AC004264.1-201ENST00000608354 794 ntBASIC26.02■■□□□ 1.76
RTF1Q92541 AL049637.2-201ENST00000641778 930 ntBASIC26.02■■□□□ 1.76
RTF1Q92541 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
RTF1Q92541 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
RTF1Q92541 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC26.02■■□□□ 1.76
RTF1Q92541 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
RTF1Q92541 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
RTF1Q92541 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.75
RTF1Q92541 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
RTF1Q92541 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
RTF1Q92541 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC26.01■■□□□ 1.75
RTF1Q92541 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
RTF1Q92541 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
RTF1Q92541 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC26.01■■□□□ 1.75
RTF1Q92541 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
RTF1Q92541 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.75
RTF1Q92541 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC26.01■■□□□ 1.75
RTF1Q92541 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC26.01■■□□□ 1.75
RTF1Q92541 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
RTF1Q92541 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
RTF1Q92541 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC26■■□□□ 1.75
RTF1Q92541 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC26■■□□□ 1.75
RTF1Q92541 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC26■■□□□ 1.75
RTF1Q92541 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
RTF1Q92541 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC26■■□□□ 1.75
RTF1Q92541 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC26■■□□□ 1.75
RTF1Q92541 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC26■■□□□ 1.75
RTF1Q92541 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
RTF1Q92541 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
RTF1Q92541 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
RTF1Q92541 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
RTF1Q92541 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC25.99■■□□□ 1.75
RTF1Q92541 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC25.99■■□□□ 1.75
RTF1Q92541 HTR7P1-201ENST00000538670 1336 ntBASIC25.99■■□□□ 1.75
RTF1Q92541 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
RTF1Q92541 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms