Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
VIMP08670 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VIMP08670 AC005332.8-201ENST00000622750 2735 ntBASIC19.99■□□□□ 0.79
VIMP08670 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
VIMP08670 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.99■□□□□ 0.79
VIMP08670 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VIMP08670 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VIMP08670 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
VIMP08670 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
VIMP08670 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
VIMP08670 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VIMP08670 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.98■□□□□ 0.79
VIMP08670 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VIMP08670 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.98■□□□□ 0.79
VIMP08670 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VIMP08670 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
VIMP08670 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VIMP08670 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
VIMP08670 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VIMP08670 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.98■□□□□ 0.79
VIMP08670 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VIMP08670 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
VIMP08670 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.98■□□□□ 0.79
VIMP08670 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VIMP08670 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.98■□□□□ 0.79
VIMP08670 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.98■□□□□ 0.79
VIMP08670 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VIMP08670 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
VIMP08670 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VIMP08670 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.98■□□□□ 0.79
VIMP08670 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
VIMP08670 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
VIMP08670 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VIMP08670 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.97■□□□□ 0.79
VIMP08670 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
VIMP08670 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VIMP08670 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.97■□□□□ 0.79
VIMP08670 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
VIMP08670 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.97■□□□□ 0.79
VIMP08670 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.97■□□□□ 0.79
VIMP08670 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
VIMP08670 AL138781.2-201ENST00000617896 1843 ntBASIC19.97■□□□□ 0.79
VIMP08670 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
VIMP08670 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
VIMP08670 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
VIMP08670 LINC01465-201ENST00000408887 1940 ntBASIC19.96■□□□□ 0.79
VIMP08670 AL049812.1-201ENST00000432563 2267 ntBASIC19.96■□□□□ 0.79
VIMP08670 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.96■□□□□ 0.79
VIMP08670 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.96■□□□□ 0.79
VIMP08670 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.96■□□□□ 0.79
VIMP08670 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.96■□□□□ 0.79
VIMP08670 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
VIMP08670 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.96■□□□□ 0.79
VIMP08670 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.96■□□□□ 0.79
VIMP08670 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VIMP08670 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.96■□□□□ 0.79
VIMP08670 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.96■□□□□ 0.79
VIMP08670 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.95■□□□□ 0.78
VIMP08670 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VIMP08670 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
VIMP08670 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
VIMP08670 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.95■□□□□ 0.78
VIMP08670 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VIMP08670 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VIMP08670 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
VIMP08670 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC19.95■□□□□ 0.78
VIMP08670 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
VIMP08670 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.95■□□□□ 0.78
VIMP08670 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
VIMP08670 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VIMP08670 AL032819.2-201ENST00000624543 2162 ntBASIC19.95■□□□□ 0.78
VIMP08670 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
VIMP08670 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VIMP08670 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VIMP08670 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VIMP08670 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VIMP08670 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
VIMP08670 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms