Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
LDLRP01130 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
LDLRP01130 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LDLRP01130 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LDLRP01130 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
LDLRP01130 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LDLRP01130 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LDLRP01130 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LDLRP01130 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
LDLRP01130 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.18■□□□□ 0.66
LDLRP01130 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
LDLRP01130 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LDLRP01130 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LDLRP01130 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LDLRP01130 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.17■□□□□ 0.66
LDLRP01130 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LDLRP01130 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LDLRP01130 AC009237.3-201ENST00000393279 1427 ntBASIC19.17■□□□□ 0.66
LDLRP01130 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
LDLRP01130 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.17■□□□□ 0.66
LDLRP01130 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LDLRP01130 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.17■□□□□ 0.66
LDLRP01130 GCSHP5-201ENST00000443090 522 ntBASIC19.17■□□□□ 0.66
LDLRP01130 AC010536.3-201ENST00000620306 533 ntBASIC19.17■□□□□ 0.66
LDLRP01130 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.17■□□□□ 0.66
LDLRP01130 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LDLRP01130 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LDLRP01130 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
LDLRP01130 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LDLRP01130 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.17■□□□□ 0.66
LDLRP01130 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.17■□□□□ 0.66
LDLRP01130 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
LDLRP01130 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
LDLRP01130 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.17■□□□□ 0.66
LDLRP01130 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.16■□□□□ 0.66
LDLRP01130 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LDLRP01130 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LDLRP01130 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LDLRP01130 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
LDLRP01130 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
LDLRP01130 MIPEPP3-201ENST00000412105 444 ntBASIC19.16■□□□□ 0.66
LDLRP01130 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.16■□□□□ 0.66
LDLRP01130 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
LDLRP01130 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LDLRP01130 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LDLRP01130 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LDLRP01130 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.16■□□□□ 0.66
LDLRP01130 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LDLRP01130 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.16■□□□□ 0.66
LDLRP01130 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LDLRP01130 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LDLRP01130 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.16■□□□□ 0.66
LDLRP01130 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LDLRP01130 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LDLRP01130 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.15■□□□□ 0.66
LDLRP01130 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.15■□□□□ 0.66
LDLRP01130 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
LDLRP01130 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.15■□□□□ 0.66
LDLRP01130 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.15■□□□□ 0.66
LDLRP01130 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.15■□□□□ 0.66
LDLRP01130 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.15■□□□□ 0.66
LDLRP01130 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
LDLRP01130 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.15■□□□□ 0.66
LDLRP01130 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
LDLRP01130 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
LDLRP01130 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.15■□□□□ 0.66
LDLRP01130 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
LDLRP01130 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.15■□□□□ 0.66
LDLRP01130 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LDLRP01130 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
LDLRP01130 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.15■□□□□ 0.66
LDLRP01130 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LDLRP01130 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
LDLRP01130 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.14■□□□□ 0.65
LDLRP01130 AL596275.1-201ENST00000423464 877 ntBASIC19.14■□□□□ 0.65
LDLRP01130 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
LDLRP01130 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LDLRP01130 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms