Protein–RNA interactions for Protein: O75841

UPK1B, Uroplakin-1b, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1BO75841 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UPK1BO75841 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UPK1BO75841 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
UPK1BO75841 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.4■□□□□ 0.38
UPK1BO75841 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
UPK1BO75841 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
UPK1BO75841 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
UPK1BO75841 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
UPK1BO75841 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
UPK1BO75841 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
UPK1BO75841 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1BO75841 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1BO75841 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1BO75841 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1BO75841 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1BO75841 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.39■□□□□ 0.37
UPK1BO75841 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1BO75841 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC17.39■□□□□ 0.37
UPK1BO75841 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
UPK1BO75841 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1BO75841 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.39■□□□□ 0.37
UPK1BO75841 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1BO75841 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.39■□□□□ 0.37
UPK1BO75841 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1BO75841 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.39■□□□□ 0.37
UPK1BO75841 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
UPK1BO75841 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1BO75841 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.39■□□□□ 0.37
UPK1BO75841 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UPK1BO75841 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1BO75841 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1BO75841 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.38■□□□□ 0.37
UPK1BO75841 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1BO75841 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1BO75841 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1BO75841 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1BO75841 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.38■□□□□ 0.37
UPK1BO75841 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
UPK1BO75841 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17.38■□□□□ 0.37
UPK1BO75841 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
UPK1BO75841 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1BO75841 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
UPK1BO75841 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.38■□□□□ 0.37
UPK1BO75841 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1BO75841 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1BO75841 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
UPK1BO75841 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.38■□□□□ 0.37
UPK1BO75841 AC106820.2-201ENST00000563775 3264 ntBASIC17.38■□□□□ 0.37
UPK1BO75841 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
UPK1BO75841 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UPK1BO75841 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UPK1BO75841 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
UPK1BO75841 WIZP1-201ENST00000531444 2299 ntBASIC17.37■□□□□ 0.37
UPK1BO75841 AC090340.1-201ENST00000620778 4980 ntBASIC17.37■□□□□ 0.37
UPK1BO75841 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
UPK1BO75841 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UPK1BO75841 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.37■□□□□ 0.37
UPK1BO75841 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
UPK1BO75841 MIR639-201ENST00000384974 98 ntBASIC17.37■□□□□ 0.37
UPK1BO75841 ABHD17AP4-201ENST00000411545 909 ntBASIC17.37■□□□□ 0.37
UPK1BO75841 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC17.37■□□□□ 0.37
UPK1BO75841 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC17.37■□□□□ 0.37
UPK1BO75841 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UPK1BO75841 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.37■□□□□ 0.37
UPK1BO75841 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.37■□□□□ 0.37
UPK1BO75841 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
UPK1BO75841 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
UPK1BO75841 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UPK1BO75841 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UPK1BO75841 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
UPK1BO75841 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
UPK1BO75841 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
UPK1BO75841 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
UPK1BO75841 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
UPK1BO75841 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
UPK1BO75841 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.36■□□□□ 0.37
UPK1BO75841 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
UPK1BO75841 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
UPK1BO75841 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
UPK1BO75841 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
UPK1BO75841 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
UPK1BO75841 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
UPK1BO75841 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.36■□□□□ 0.37
UPK1BO75841 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.36■□□□□ 0.37
UPK1BO75841 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.36■□□□□ 0.37
UPK1BO75841 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.36■□□□□ 0.37
UPK1BO75841 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.36■□□□□ 0.37
UPK1BO75841 AC099398.1-201ENST00000567919 2776 ntBASIC17.36■□□□□ 0.37
UPK1BO75841 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
UPK1BO75841 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
UPK1BO75841 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
UPK1BO75841 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
UPK1BO75841 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
UPK1BO75841 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
UPK1BO75841 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
UPK1BO75841 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.35■□□□□ 0.37
UPK1BO75841 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
UPK1BO75841 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
UPK1BO75841 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.35■□□□□ 0.37
UPK1BO75841 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms