Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SSSCA1O60232 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SSSCA1O60232 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SSSCA1O60232 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSSCA1O60232 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
SSSCA1O60232 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSSCA1O60232 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SSSCA1O60232 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSSCA1O60232 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC16.24■□□□□ 0.19
SSSCA1O60232 PTPA-214ENST00000423100 988 ntTSL 2 BASIC16.24■□□□□ 0.19
SSSCA1O60232 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC16.24■□□□□ 0.19
SSSCA1O60232 AC131281.2-201ENST00000520478 145 ntBASIC16.24■□□□□ 0.19
SSSCA1O60232 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSSCA1O60232 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC16.24■□□□□ 0.19
SSSCA1O60232 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SSSCA1O60232 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC16.24■□□□□ 0.19
SSSCA1O60232 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SSSCA1O60232 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSSCA1O60232 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC16.24■□□□□ 0.19
SSSCA1O60232 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SSSCA1O60232 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.23■□□□□ 0.19
SSSCA1O60232 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSSCA1O60232 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SSSCA1O60232 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SSSCA1O60232 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC16.23■□□□□ 0.19
SSSCA1O60232 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSSCA1O60232 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SSSCA1O60232 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.23■□□□□ 0.19
SSSCA1O60232 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSSCA1O60232 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSSCA1O60232 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC16.23■□□□□ 0.19
SSSCA1O60232 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSSCA1O60232 GRAMD4P2-201ENST00000423297 1097 ntBASIC16.23■□□□□ 0.19
SSSCA1O60232 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSSCA1O60232 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SSSCA1O60232 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC16.23■□□□□ 0.19
SSSCA1O60232 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC16.23■□□□□ 0.19
SSSCA1O60232 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SSSCA1O60232 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC16.23■□□□□ 0.19
SSSCA1O60232 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SSSCA1O60232 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSSCA1O60232 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSSCA1O60232 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.23■□□□□ 0.19
SSSCA1O60232 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SSSCA1O60232 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.23■□□□□ 0.19
SSSCA1O60232 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SSSCA1O60232 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSSCA1O60232 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSSCA1O60232 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC16.23■□□□□ 0.19
SSSCA1O60232 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC16.23■□□□□ 0.19
SSSCA1O60232 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC16.22■□□□□ 0.19
SSSCA1O60232 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSSCA1O60232 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
SSSCA1O60232 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSSCA1O60232 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC16.22■□□□□ 0.19
SSSCA1O60232 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC16.22■□□□□ 0.19
SSSCA1O60232 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SSSCA1O60232 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.22■□□□□ 0.19
SSSCA1O60232 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSSCA1O60232 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSSCA1O60232 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSSCA1O60232 KRT16P2-201ENST00000414673 1423 ntBASIC16.22■□□□□ 0.19
SSSCA1O60232 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSSCA1O60232 CD37-204ENST00000535669 1674 ntTSL 2 BASIC16.22■□□□□ 0.19
SSSCA1O60232 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSSCA1O60232 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.22■□□□□ 0.19
SSSCA1O60232 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSSCA1O60232 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC16.22■□□□□ 0.19
SSSCA1O60232 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SSSCA1O60232 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC16.22■□□□□ 0.19
SSSCA1O60232 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC16.22■□□□□ 0.19
SSSCA1O60232 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC16.22■□□□□ 0.19
SSSCA1O60232 AC008764.7-201ENST00000593779 1081 ntBASIC16.22■□□□□ 0.19
SSSCA1O60232 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.22■□□□□ 0.19
SSSCA1O60232 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
SSSCA1O60232 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSSCA1O60232 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSSCA1O60232 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSSCA1O60232 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
SSSCA1O60232 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSSCA1O60232 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSSCA1O60232 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
SSSCA1O60232 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSSCA1O60232 KRT8P36-201ENST00000489121 1440 ntBASIC16.21■□□□□ 0.19
SSSCA1O60232 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC16.21■□□□□ 0.19
SSSCA1O60232 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSSCA1O60232 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSSCA1O60232 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSSCA1O60232 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSSCA1O60232 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SSSCA1O60232 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC16.21■□□□□ 0.19
SSSCA1O60232 AL356441.2-201ENST00000443009 864 ntBASIC16.21■□□□□ 0.19
SSSCA1O60232 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC16.21■□□□□ 0.19
SSSCA1O60232 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SSSCA1O60232 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC16.21■□□□□ 0.19
SSSCA1O60232 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SSSCA1O60232 AC120498.10-201ENST00000621827 505 ntBASIC16.21■□□□□ 0.19
SSSCA1O60232 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC16.21■□□□□ 0.19
SSSCA1O60232 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSSCA1O60232 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms