Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 MIR193BHG-211ENST00000641433 5365 ntBASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 AC090877.2-201ENST00000558441 1738 ntBASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC11.11□□□□□ -0.63
CHKB-CPT1BH3BT56 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 CHST11-202ENST00000546689 756 ntTSL 2 BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
CHKB-CPT1BH3BT56 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CHKB-CPT1BH3BT56 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
CHKB-CPT1BH3BT56 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC11.09□□□□□ -0.63
CHKB-CPT1BH3BT56 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CHKB-CPT1BH3BT56 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CHKB-CPT1BH3BT56 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CHKB-CPT1BH3BT56 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CHKB-CPT1BH3BT56 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
CHKB-CPT1BH3BT56 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CHKB-CPT1BH3BT56 ME2-206ENST00000638410 2289 ntTSL 5 BASIC11.09□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms