Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC23.2■■□□□ 1.3
CLCF1Q9UBD9 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CLCF1Q9UBD9 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLCF1Q9UBD9 MIR639-201ENST00000384974 98 ntBASIC23.2■■□□□ 1.3
CLCF1Q9UBD9 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CLCF1Q9UBD9 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.2■■□□□ 1.3
CLCF1Q9UBD9 AC016575.1-201ENST00000607026 382 ntBASIC23.2■■□□□ 1.3
CLCF1Q9UBD9 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CLCF1Q9UBD9 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.19■■□□□ 1.3
CLCF1Q9UBD9 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CLCF1Q9UBD9 AC127502.1-201ENST00000399971 1502 ntBASIC23.19■■□□□ 1.3
CLCF1Q9UBD9 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CLCF1Q9UBD9 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.19■■□□□ 1.3
CLCF1Q9UBD9 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CLCF1Q9UBD9 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CLCF1Q9UBD9 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CLCF1Q9UBD9 DUX4L13-201ENST00000554103 1267 ntBASIC23.18■■□□□ 1.3
CLCF1Q9UBD9 DUX4L15-201ENST00000611059 1267 ntBASIC23.18■■□□□ 1.3
CLCF1Q9UBD9 DUX4L23-201ENST00000615195 1269 ntBASIC23.18■■□□□ 1.3
CLCF1Q9UBD9 DUX4L24-201ENST00000617576 1269 ntBASIC23.18■■□□□ 1.3
CLCF1Q9UBD9 DUX4L22-201ENST00000618238 1269 ntBASIC23.18■■□□□ 1.3
CLCF1Q9UBD9 DUX4L20-201ENST00000619712 1269 ntBASIC23.18■■□□□ 1.3
CLCF1Q9UBD9 DUX4L21-201ENST00000622058 1269 ntBASIC23.18■■□□□ 1.3
CLCF1Q9UBD9 DUX4L10-201ENST00000622460 1267 ntBASIC23.18■■□□□ 1.3
CLCF1Q9UBD9 DUX4L25-201ENST00000624915 1269 ntBASIC23.18■■□□□ 1.3
CLCF1Q9UBD9 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC23.17■■□□□ 1.3
CLCF1Q9UBD9 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC23.17■■□□□ 1.3
CLCF1Q9UBD9 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLCF1Q9UBD9 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
CLCF1Q9UBD9 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLCF1Q9UBD9 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLCF1Q9UBD9 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLCF1Q9UBD9 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLCF1Q9UBD9 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CLCF1Q9UBD9 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CLCF1Q9UBD9 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC23.14■■□□□ 1.3
CLCF1Q9UBD9 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
CLCF1Q9UBD9 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CLCF1Q9UBD9 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.14■■□□□ 1.29
CLCF1Q9UBD9 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CLCF1Q9UBD9 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC23.13■■□□□ 1.29
CLCF1Q9UBD9 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.13■■□□□ 1.29
CLCF1Q9UBD9 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.13■■□□□ 1.29
CLCF1Q9UBD9 MIR4449-201ENST00000578365 66 ntBASIC23.13■■□□□ 1.29
CLCF1Q9UBD9 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC23.13■■□□□ 1.29
CLCF1Q9UBD9 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
CLCF1Q9UBD9 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
CLCF1Q9UBD9 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CLCF1Q9UBD9 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC23.11■■□□□ 1.29
CLCF1Q9UBD9 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLCF1Q9UBD9 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
CLCF1Q9UBD9 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
CLCF1Q9UBD9 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
CLCF1Q9UBD9 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CLCF1Q9UBD9 ST7-AS1-201ENST00000456775 1889 ntBASIC23.07■■□□□ 1.28
CLCF1Q9UBD9 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC23.07■■□□□ 1.28
CLCF1Q9UBD9 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.07■■□□□ 1.28
CLCF1Q9UBD9 AC135983.2-203ENST00000454486 1613 ntBASIC23.07■■□□□ 1.28
CLCF1Q9UBD9 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
CLCF1Q9UBD9 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CLCF1Q9UBD9 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CLCF1Q9UBD9 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CLCF1Q9UBD9 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CLCF1Q9UBD9 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CLCF1Q9UBD9 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CLCF1Q9UBD9 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
CLCF1Q9UBD9 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
CLCF1Q9UBD9 WHAMMP2-203ENST00000563942 1603 ntBASIC23.04■■□□□ 1.28
CLCF1Q9UBD9 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CLCF1Q9UBD9 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
CLCF1Q9UBD9 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CLCF1Q9UBD9 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CLCF1Q9UBD9 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CLCF1Q9UBD9 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CLCF1Q9UBD9 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.01■■□□□ 1.27
CLCF1Q9UBD9 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CLCF1Q9UBD9 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
CLCF1Q9UBD9 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CLCF1Q9UBD9 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
CLCF1Q9UBD9 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.01■■□□□ 1.27
CLCF1Q9UBD9 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
CLCF1Q9UBD9 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23■■□□□ 1.27
CLCF1Q9UBD9 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23■■□□□ 1.27
CLCF1Q9UBD9 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CLCF1Q9UBD9 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CLCF1Q9UBD9 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CLCF1Q9UBD9 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CLCF1Q9UBD9 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CLCF1Q9UBD9 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
CLCF1Q9UBD9 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
CLCF1Q9UBD9 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CLCF1Q9UBD9 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CLCF1Q9UBD9 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC22.98■■□□□ 1.27
CLCF1Q9UBD9 CHST11-202ENST00000546689 756 ntTSL 2 BASIC22.98■■□□□ 1.27
CLCF1Q9UBD9 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CLCF1Q9UBD9 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CLCF1Q9UBD9 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CLCF1Q9UBD9 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
CLCF1Q9UBD9 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC22.96■■□□□ 1.27
CLCF1Q9UBD9 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC22.95■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms