Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
RNF139Q8WU17 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC27.24■■□□□ 1.95
RNF139Q8WU17 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
RNF139Q8WU17 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
RNF139Q8WU17 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
RNF139Q8WU17 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
RNF139Q8WU17 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
RNF139Q8WU17 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
RNF139Q8WU17 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC27.22■■□□□ 1.95
RNF139Q8WU17 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC27.22■■□□□ 1.95
RNF139Q8WU17 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC27.22■■□□□ 1.95
RNF139Q8WU17 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
RNF139Q8WU17 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC27.22■■□□□ 1.95
RNF139Q8WU17 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC27.22■■□□□ 1.95
RNF139Q8WU17 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC27.21■■□□□ 1.95
RNF139Q8WU17 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
RNF139Q8WU17 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC27.21■■□□□ 1.95
RNF139Q8WU17 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
RNF139Q8WU17 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
RNF139Q8WU17 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
RNF139Q8WU17 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
RNF139Q8WU17 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
RNF139Q8WU17 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.95
RNF139Q8WU17 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC27.19■■□□□ 1.94
RNF139Q8WU17 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
RNF139Q8WU17 MIR7108-201ENST00000614319 87 ntBASIC27.19■■□□□ 1.94
RNF139Q8WU17 AC127502.1-201ENST00000399971 1502 ntBASIC27.19■■□□□ 1.94
RNF139Q8WU17 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
RNF139Q8WU17 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
RNF139Q8WU17 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
RNF139Q8WU17 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC27.18■■□□□ 1.94
RNF139Q8WU17 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
RNF139Q8WU17 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC27.17■■□□□ 1.94
RNF139Q8WU17 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
RNF139Q8WU17 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
RNF139Q8WU17 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
RNF139Q8WU17 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC27.16■■□□□ 1.94
RNF139Q8WU17 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
RNF139Q8WU17 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
RNF139Q8WU17 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
RNF139Q8WU17 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC27.15■■□□□ 1.94
RNF139Q8WU17 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC27.15■■□□□ 1.94
RNF139Q8WU17 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
RNF139Q8WU17 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
RNF139Q8WU17 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC27.14■■□□□ 1.94
RNF139Q8WU17 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC27.14■■□□□ 1.94
RNF139Q8WU17 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC27.14■■□□□ 1.93
RNF139Q8WU17 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC27.13■■□□□ 1.93
RNF139Q8WU17 ABCB10P3-201ENST00000561950 2166 ntBASIC27.13■■□□□ 1.93
RNF139Q8WU17 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC27.12■■□□□ 1.93
RNF139Q8WU17 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
RNF139Q8WU17 CALM3-209ENST00000597743 577 ntTSL 4 BASIC27.12■■□□□ 1.93
RNF139Q8WU17 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
RNF139Q8WU17 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC27.11■■□□□ 1.93
RNF139Q8WU17 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
RNF139Q8WU17 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC27.1■■□□□ 1.93
RNF139Q8WU17 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
RNF139Q8WU17 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
RNF139Q8WU17 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
RNF139Q8WU17 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
RNF139Q8WU17 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
RNF139Q8WU17 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
RNF139Q8WU17 LINC00273-201ENST00000539813 1452 ntBASIC27.08■■□□□ 1.93
RNF139Q8WU17 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC27.08■■□□□ 1.93
RNF139Q8WU17 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC27.08■■□□□ 1.93
RNF139Q8WU17 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC27.07■■□□□ 1.92
RNF139Q8WU17 PVT1-219ENST00000523427 938 ntTSL 3 BASIC27.07■■□□□ 1.92
RNF139Q8WU17 LINC01971-201ENST00000617888 1048 ntBASIC27.07■■□□□ 1.92
RNF139Q8WU17 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC27.07■■□□□ 1.92
RNF139Q8WU17 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC27.07■■□□□ 1.92
RNF139Q8WU17 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
RNF139Q8WU17 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
RNF139Q8WU17 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
RNF139Q8WU17 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC27.05■■□□□ 1.92
RNF139Q8WU17 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC27.04■■□□□ 1.92
RNF139Q8WU17 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
RNF139Q8WU17 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC27.04■■□□□ 1.92
RNF139Q8WU17 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC27.04■■□□□ 1.92
RNF139Q8WU17 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC27.04■■□□□ 1.92
RNF139Q8WU17 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
RNF139Q8WU17 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
RNF139Q8WU17 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC27.03■■□□□ 1.92
RNF139Q8WU17 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
RNF139Q8WU17 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
RNF139Q8WU17 AC139426.1-201ENST00000568218 2529 ntBASIC27.03■■□□□ 1.92
RNF139Q8WU17 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
RNF139Q8WU17 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
RNF139Q8WU17 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC27.01■■□□□ 1.91
RNF139Q8WU17 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC27.01■■□□□ 1.91
RNF139Q8WU17 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
RNF139Q8WU17 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
RNF139Q8WU17 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC27■■□□□ 1.91
RNF139Q8WU17 DUX4L11-201ENST00000611504 1267 ntBASIC27■■□□□ 1.91
RNF139Q8WU17 DUX4L12-201ENST00000614593 1267 ntBASIC27■■□□□ 1.91
RNF139Q8WU17 DUX4L14-201ENST00000621227 1267 ntBASIC27■■□□□ 1.91
RNF139Q8WU17 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
RNF139Q8WU17 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC26.99■■□□□ 1.91
RNF139Q8WU17 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC26.98■■□□□ 1.91
RNF139Q8WU17 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC26.98■■□□□ 1.91
RNF139Q8WU17 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC26.98■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms