Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
RPUSD3Q6P087 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
RPUSD3Q6P087 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC23.82■■□□□ 1.4
RPUSD3Q6P087 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RPUSD3Q6P087 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RPUSD3Q6P087 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC23.81■■□□□ 1.4
RPUSD3Q6P087 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
RPUSD3Q6P087 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RPUSD3Q6P087 LINC00273-201ENST00000539813 1452 ntBASIC23.81■■□□□ 1.4
RPUSD3Q6P087 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
RPUSD3Q6P087 AL161658.1-201ENST00000623641 1967 ntBASIC23.8■■□□□ 1.4
RPUSD3Q6P087 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC23.8■■□□□ 1.4
RPUSD3Q6P087 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RPUSD3Q6P087 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
RPUSD3Q6P087 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RPUSD3Q6P087 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC23.79■■□□□ 1.4
RPUSD3Q6P087 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.79■■□□□ 1.4
RPUSD3Q6P087 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.79■■□□□ 1.4
RPUSD3Q6P087 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RPUSD3Q6P087 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RPUSD3Q6P087 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.78■■□□□ 1.4
RPUSD3Q6P087 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RPUSD3Q6P087 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RPUSD3Q6P087 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RPUSD3Q6P087 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RPUSD3Q6P087 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RPUSD3Q6P087 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC23.77■■□□□ 1.4
RPUSD3Q6P087 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RPUSD3Q6P087 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC23.77■■□□□ 1.4
RPUSD3Q6P087 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RPUSD3Q6P087 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
RPUSD3Q6P087 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
RPUSD3Q6P087 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
RPUSD3Q6P087 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
RPUSD3Q6P087 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RPUSD3Q6P087 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC23.76■■□□□ 1.39
RPUSD3Q6P087 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC23.76■■□□□ 1.39
RPUSD3Q6P087 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
RPUSD3Q6P087 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
RPUSD3Q6P087 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC23.75■■□□□ 1.39
RPUSD3Q6P087 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
RPUSD3Q6P087 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
RPUSD3Q6P087 SRP68-213ENST00000629930 165 ntTSL 5 BASIC23.74■■□□□ 1.39
RPUSD3Q6P087 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
RPUSD3Q6P087 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RPUSD3Q6P087 AC010864.1-201ENST00000609407 1511 ntBASIC23.73■■□□□ 1.39
RPUSD3Q6P087 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RPUSD3Q6P087 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC23.73■■□□□ 1.39
RPUSD3Q6P087 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.72■■□□□ 1.39
RPUSD3Q6P087 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.72■■□□□ 1.39
RPUSD3Q6P087 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RPUSD3Q6P087 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.72■■□□□ 1.39
RPUSD3Q6P087 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
RPUSD3Q6P087 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RPUSD3Q6P087 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC23.71■■□□□ 1.39
RPUSD3Q6P087 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RPUSD3Q6P087 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
RPUSD3Q6P087 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
RPUSD3Q6P087 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RPUSD3Q6P087 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC23.7■■□□□ 1.38
RPUSD3Q6P087 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
RPUSD3Q6P087 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
RPUSD3Q6P087 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
RPUSD3Q6P087 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC23.68■■□□□ 1.38
RPUSD3Q6P087 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
RPUSD3Q6P087 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RPUSD3Q6P087 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RPUSD3Q6P087 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RPUSD3Q6P087 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
RPUSD3Q6P087 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
RPUSD3Q6P087 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.66■■□□□ 1.38
RPUSD3Q6P087 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC23.66■■□□□ 1.38
RPUSD3Q6P087 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RPUSD3Q6P087 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.65■■□□□ 1.38
RPUSD3Q6P087 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
RPUSD3Q6P087 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
RPUSD3Q6P087 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
RPUSD3Q6P087 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC23.63■■□□□ 1.37
RPUSD3Q6P087 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
RPUSD3Q6P087 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
RPUSD3Q6P087 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
RPUSD3Q6P087 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
RPUSD3Q6P087 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
RPUSD3Q6P087 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
RPUSD3Q6P087 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RPUSD3Q6P087 TPT1-202ENST00000379055 948 ntTSL 2 BASIC23.61■■□□□ 1.37
RPUSD3Q6P087 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
RPUSD3Q6P087 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
RPUSD3Q6P087 RARRES2P2-201ENST00000394842 485 ntBASIC23.6■■□□□ 1.37
RPUSD3Q6P087 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC23.6■■□□□ 1.37
RPUSD3Q6P087 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RPUSD3Q6P087 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.59■■□□□ 1.37
RPUSD3Q6P087 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC23.59■■□□□ 1.37
RPUSD3Q6P087 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.59■■□□□ 1.37
RPUSD3Q6P087 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
RPUSD3Q6P087 GPX1-201ENST00000419349 1106 ntBASIC23.58■■□□□ 1.37
RPUSD3Q6P087 AC008813.1-201ENST00000536597 885 ntBASIC23.58■■□□□ 1.37
RPUSD3Q6P087 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RPUSD3Q6P087 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
RPUSD3Q6P087 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms