Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC30.15■■■□□ 2.42
CCDC144BQ3MJ40 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC144BQ3MJ40 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
CCDC144BQ3MJ40 LINC01971-201ENST00000617888 1048 ntBASIC30.14■■■□□ 2.42
CCDC144BQ3MJ40 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC30.11■■■□□ 2.41
CCDC144BQ3MJ40 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CCDC144BQ3MJ40 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC30.11■■■□□ 2.41
CCDC144BQ3MJ40 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC30.11■■■□□ 2.41
CCDC144BQ3MJ40 CR559946.2-201ENST00000623684 991 ntBASIC30.1■■■□□ 2.41
CCDC144BQ3MJ40 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC144BQ3MJ40 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC144BQ3MJ40 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.09■■■□□ 2.41
CCDC144BQ3MJ40 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC144BQ3MJ40 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC30.07■■■□□ 2.4
CCDC144BQ3MJ40 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.07■■■□□ 2.4
CCDC144BQ3MJ40 AGPS-202ENST00000409888 815 ntTSL 4 BASIC30.07■■■□□ 2.4
CCDC144BQ3MJ40 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.07■■■□□ 2.4
CCDC144BQ3MJ40 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC30.06■■■□□ 2.4
CCDC144BQ3MJ40 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC30.06■■■□□ 2.4
CCDC144BQ3MJ40 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC144BQ3MJ40 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC144BQ3MJ40 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.05■■■□□ 2.4
CCDC144BQ3MJ40 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC30.05■■■□□ 2.4
CCDC144BQ3MJ40 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
CCDC144BQ3MJ40 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC30.04■■■□□ 2.4
CCDC144BQ3MJ40 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CCDC144BQ3MJ40 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CCDC144BQ3MJ40 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CCDC144BQ3MJ40 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.03■■■□□ 2.4
CCDC144BQ3MJ40 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC30.03■■■□□ 2.4
CCDC144BQ3MJ40 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
CCDC144BQ3MJ40 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.02■■■□□ 2.4
CCDC144BQ3MJ40 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
CCDC144BQ3MJ40 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC30.01■■■□□ 2.39
CCDC144BQ3MJ40 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
CCDC144BQ3MJ40 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC30■■■□□ 2.39
CCDC144BQ3MJ40 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
CCDC144BQ3MJ40 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC30■■■□□ 2.39
CCDC144BQ3MJ40 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
CCDC144BQ3MJ40 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
CCDC144BQ3MJ40 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC29.97■■■□□ 2.39
CCDC144BQ3MJ40 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
CCDC144BQ3MJ40 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
CCDC144BQ3MJ40 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC29.97■■■□□ 2.39
CCDC144BQ3MJ40 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC29.96■■■□□ 2.39
CCDC144BQ3MJ40 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
CCDC144BQ3MJ40 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC29.96■■■□□ 2.39
CCDC144BQ3MJ40 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC29.96■■■□□ 2.39
CCDC144BQ3MJ40 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC29.96■■■□□ 2.39
CCDC144BQ3MJ40 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC29.95■■■□□ 2.39
CCDC144BQ3MJ40 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
CCDC144BQ3MJ40 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
CCDC144BQ3MJ40 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
CCDC144BQ3MJ40 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
CCDC144BQ3MJ40 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC29.94■■■□□ 2.38
CCDC144BQ3MJ40 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
CCDC144BQ3MJ40 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
CCDC144BQ3MJ40 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
CCDC144BQ3MJ40 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
CCDC144BQ3MJ40 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC29.93■■■□□ 2.38
CCDC144BQ3MJ40 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC29.92■■■□□ 2.38
CCDC144BQ3MJ40 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
CCDC144BQ3MJ40 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC29.91■■■□□ 2.38
CCDC144BQ3MJ40 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC29.91■■■□□ 2.38
CCDC144BQ3MJ40 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC29.91■■■□□ 2.38
CCDC144BQ3MJ40 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
CCDC144BQ3MJ40 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC29.9■■■□□ 2.38
CCDC144BQ3MJ40 HSD17B1P1-201ENST00000590052 955 ntBASIC29.9■■■□□ 2.38
CCDC144BQ3MJ40 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
CCDC144BQ3MJ40 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
CCDC144BQ3MJ40 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
CCDC144BQ3MJ40 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC29.88■■■□□ 2.37
CCDC144BQ3MJ40 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC29.87■■■□□ 2.37
CCDC144BQ3MJ40 EI24-212ENST00000615917 1407 ntTSL 2 BASIC29.87■■■□□ 2.37
CCDC144BQ3MJ40 DUX4L13-201ENST00000554103 1267 ntBASIC29.86■■■□□ 2.37
CCDC144BQ3MJ40 DUX4L15-201ENST00000611059 1267 ntBASIC29.86■■■□□ 2.37
CCDC144BQ3MJ40 DUX4L23-201ENST00000615195 1269 ntBASIC29.86■■■□□ 2.37
CCDC144BQ3MJ40 DUX4L24-201ENST00000617576 1269 ntBASIC29.86■■■□□ 2.37
CCDC144BQ3MJ40 DUX4L22-201ENST00000618238 1269 ntBASIC29.86■■■□□ 2.37
CCDC144BQ3MJ40 DUX4L20-201ENST00000619712 1269 ntBASIC29.86■■■□□ 2.37
CCDC144BQ3MJ40 DUX4L21-201ENST00000622058 1269 ntBASIC29.86■■■□□ 2.37
CCDC144BQ3MJ40 DUX4L10-201ENST00000622460 1267 ntBASIC29.86■■■□□ 2.37
CCDC144BQ3MJ40 DUX4L25-201ENST00000624915 1269 ntBASIC29.86■■■□□ 2.37
CCDC144BQ3MJ40 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CCDC144BQ3MJ40 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC29.86■■■□□ 2.37
CCDC144BQ3MJ40 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC29.84■■■□□ 2.37
CCDC144BQ3MJ40 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
CCDC144BQ3MJ40 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC29.83■■■□□ 2.37
CCDC144BQ3MJ40 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
CCDC144BQ3MJ40 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC29.82■■■□□ 2.36
CCDC144BQ3MJ40 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC29.81■■■□□ 2.36
CCDC144BQ3MJ40 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CCDC144BQ3MJ40 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CCDC144BQ3MJ40 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CCDC144BQ3MJ40 METRNL-202ENST00000570778 967 ntTSL 5 BASIC29.8■■■□□ 2.36
CCDC144BQ3MJ40 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC29.8■■■□□ 2.36
CCDC144BQ3MJ40 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC29.8■■■□□ 2.36
CCDC144BQ3MJ40 AL161658.1-201ENST00000623641 1967 ntBASIC29.79■■■□□ 2.36
CCDC144BQ3MJ40 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC29.79■■■□□ 2.36
CCDC144BQ3MJ40 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC29.79■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms