Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
CXCL12P48061 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
CXCL12P48061 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CXCL12P48061 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
CXCL12P48061 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC26.46■■□□□ 1.83
CXCL12P48061 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC26.46■■□□□ 1.83
CXCL12P48061 AC120057.4-201ENST00000624722 1615 ntBASIC26.45■■□□□ 1.82
CXCL12P48061 LINC00273-201ENST00000539813 1452 ntBASIC26.44■■□□□ 1.82
CXCL12P48061 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CXCL12P48061 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
CXCL12P48061 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CXCL12P48061 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CXCL12P48061 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CXCL12P48061 AC022413.1-201ENST00000624602 984 ntBASIC26.41■■□□□ 1.82
CXCL12P48061 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CXCL12P48061 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CXCL12P48061 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CXCL12P48061 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CXCL12P48061 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
CXCL12P48061 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CXCL12P48061 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC26.4■■□□□ 1.82
CXCL12P48061 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CXCL12P48061 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC26.39■■□□□ 1.82
CXCL12P48061 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CXCL12P48061 NTF6A-201ENST00000591175 560 ntBASIC26.39■■□□□ 1.82
CXCL12P48061 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
CXCL12P48061 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC26.37■■□□□ 1.81
CXCL12P48061 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC26.37■■□□□ 1.81
CXCL12P48061 HES4-202ENST00000428771 1040 ntTSL 2 BASIC26.37■■□□□ 1.81
CXCL12P48061 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC26.37■■□□□ 1.81
CXCL12P48061 AC012354.3-201ENST00000623734 483 ntBASIC26.37■■□□□ 1.81
CXCL12P48061 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
CXCL12P48061 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
CXCL12P48061 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CXCL12P48061 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CXCL12P48061 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC26.35■■□□□ 1.81
CXCL12P48061 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CXCL12P48061 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CXCL12P48061 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
CXCL12P48061 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
CXCL12P48061 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC26.33■■□□□ 1.8
CXCL12P48061 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CXCL12P48061 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC26.32■■□□□ 1.8
CXCL12P48061 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CXCL12P48061 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CXCL12P48061 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CXCL12P48061 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC26.31■■□□□ 1.8
CXCL12P48061 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CXCL12P48061 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC26.31■■□□□ 1.8
CXCL12P48061 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC26.31■■□□□ 1.8
CXCL12P48061 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC26.31■■□□□ 1.8
CXCL12P48061 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CXCL12P48061 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.31■■□□□ 1.8
CXCL12P48061 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.3■■□□□ 1.8
CXCL12P48061 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
CXCL12P48061 AC008813.1-201ENST00000536597 885 ntBASIC26.29■■□□□ 1.8
CXCL12P48061 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CXCL12P48061 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CXCL12P48061 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
CXCL12P48061 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CXCL12P48061 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CXCL12P48061 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC26.25■■□□□ 1.79
CXCL12P48061 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC26.25■■□□□ 1.79
CXCL12P48061 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
CXCL12P48061 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CXCL12P48061 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC26.25■■□□□ 1.79
CXCL12P48061 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CXCL12P48061 AL161658.1-201ENST00000623641 1967 ntBASIC26.24■■□□□ 1.79
CXCL12P48061 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CXCL12P48061 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CXCL12P48061 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CXCL12P48061 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CXCL12P48061 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CXCL12P48061 AC010864.1-201ENST00000609407 1511 ntBASIC26.21■■□□□ 1.79
CXCL12P48061 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CXCL12P48061 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.79
CXCL12P48061 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.78
CXCL12P48061 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CXCL12P48061 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC26.19■■□□□ 1.78
CXCL12P48061 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CXCL12P48061 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CXCL12P48061 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CXCL12P48061 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CXCL12P48061 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
CXCL12P48061 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CXCL12P48061 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC26.17■■□□□ 1.78
CXCL12P48061 AL033527.3-201ENST00000566366 1196 ntBASIC26.17■■□□□ 1.78
CXCL12P48061 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CXCL12P48061 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC26.17■■□□□ 1.78
CXCL12P48061 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CXCL12P48061 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CXCL12P48061 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
CXCL12P48061 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CXCL12P48061 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC26.16■■□□□ 1.78
CXCL12P48061 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CXCL12P48061 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
CXCL12P48061 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC26.15■■□□□ 1.78
CXCL12P48061 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CXCL12P48061 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.14■■□□□ 1.78
CXCL12P48061 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms